# List of top-scoring protein chains for T0210.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gy1A 155 7.42e-02 b.6.1.1 70724 1e30A 155 1.00e-01 1rcy b.6.1.1 23016 1gy2A 155 1.01e-01 b.6.1.1 70726 1a3z 155 1.01e-01 1rcy b.6.1.1 23019 1a8z 153 1.01e-01 1rcy b.6.1.1 23020 1cur 155 1.02e-01 1rcy b.6.1.1 23021 1rcy 151 1.03e-01 1rcy b.6.1.1 23018 1qqp2 218 3.87e-01 1qqp2 1gvhA 396 1.08e+00 a.1.1.2 70601 b.43.4.2 70602 c.25.1.5 70603 1fmd2 218 1.55e+00 1qqp2 1lo0H 220 2.08e+00 b.1.1.1 74115 b.1.1.2 74116 1uweH 218 2.61e+00 1faiH 221 4.01e+00 1mfa b.1.1.1 19845 b.1.1.2 20949 1sqlA 146 4.50e+00 5gcnA 166 4.80e+00 1yghA d.108.1.1 40807 1qsrA 162 5.15e+00 1yghA d.108.1.1 40805 1m1dA 163 5.20e+00 d.108.1.1 78397 1di1A 300 6.37e+00 1di1A a.128.1.4 19446 1eoeA 100 6.51e+00 1t1dA d.42.1.2 38638 1cm0A 168 7.26e+00 1yghA d.108.1.1 40800 1t1dA 100 7.74e+00 1t1dA d.42.1.2 38637 1j58A 385 7.77e+00 b.82.1.2 71531 1qstA 160 7.99e+00 1yghA d.108.1.1 40804 1eodA 100 8.30e+00 1t1dA d.42.1.2 38641 1eofA 100 8.58e+00 1t1dA d.42.1.2 38640 1a68 95 8.85e+00 1t1dA d.42.1.2 38639 1dzrA 183 9.19e+00 1dzrA b.82.1.1 28076 2todA 425 9.21e+00 7odcA b.49.2.3 26489 c.1.6.1 28651 1a7fB 29 9.23e+00 g.1.1.1 43943 1p35A 299 9.87e+00 1p35A b.28.1.1 23925 1i4eA 300 9.90e+00 1p35A b.28.1.1 61685 1i3pA 298 1.01e+01 b.28.1.1 66020 1ggaA 358 1.01e+01 1dssG c.2.1.3 30002 d.81.1.1 39917 1i3sA 298 1.02e+01 b.28.1.1 66021 1njjA 425 1.04e+01 1f3tA 425 1.05e+01 7odcA b.49.2.3 26493 c.1.6.1 28655 1a3k 137 1.05e+01 1a3k b.29.1.3 24218 1n8iA 741 1.34e+01 c.1.13.1 80297 1e5dA 402 1.44e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1lr5A 163 1.46e+01 b.82.1.2 74215 1mcvI 28 1.48e+01 g.3.2.1 78951 1k7jA 206 1.59e+01 d.115.1.1 72103 1pf5A 131 1.61e+01 1mpyA 307 1.61e+01 1mpyA d.32.1.3 38508 d.32.1.3 38509 1kk9A 221 1.63e+01 d.115.1.1 77432 2eti 28 1.63e+01 g.3.2.1 44073 2let 28 1.65e+01 g.3.2.1 44072 1fyaA 193 1.81e+01 1derA c.8.5.1 30774 1jb3A 131 1.81e+01 1jc7A b.40.3.2 62833 1jc7A 131 1.82e+01 1jc7A b.40.3.2 62873 1nz8A 119 1.87e+01 1nwvA 129 1.91e+01 g.18.1.1 86304 g.18.1.1 86305 1lzlA 323 1.94e+01 c.69.1.2 78306 1ygs 234 1.95e+01 1ygs b.26.1.1 23907 1mr1A 235 1.98e+01 b.26.1.1 79418 1cdoA 374 2.02e+01 2ohxA b.35.1.2 24747 c.2.1.1 29763 1hyvA 164 2.09e+01 1b9dA c.55.3.2 61424 1kb9B 352 2.22e+01 d.185.1.1 77313 d.185.1.1 77314 1iq8A 582 2.24e+01 b.122.1.1 83074 c.1.20.1 71270 d.17.6.1 83075 1dd1A 268 2.26e+01 b.26.1.1 23908 1g88A 268 2.27e+01 1ygs b.26.1.1 23911 1elvA 333 2.28e+01 5ptp b.47.1.2 59454 g.18.1.1 59455 1in8A 334 2.30e+01 1hqcA a.4.5.11 62605 c.37.1.20 62606 1pq4A 291 2.37e+01 1oksA 56 2.43e+01 1jlyA 304 2.56e+01 1jlyA b.42.3.1 25587 b.42.3.1 25588 1f8yA 157 2.62e+01 1f8xA c.23.14.1 31395 1a78A 134 2.63e+01 1c1lA b.29.1.3 24212 1vr2A 315 2.67e+01 1fgkA d.144.1.7 41701 1fcdA 401 2.68e+01 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1exqA 154 2.69e+01 1b9dA c.55.3.2 33646 1adqH 225 2.74e+01 1igtB b.1.1.1 20273 b.1.1.2 21273 1apf 49 2.77e+01 1ahl g.9.1.1 44602 1g97A 459 2.77e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 1uwgH 225 2.85e+01 1de0A 289 2.97e+01 1cp2A c.37.1.10 32255 1d2zB 153 3.03e+01 1d2zB a.77.1.2 18439 1sbp 310 3.11e+01 1sbp c.94.1.1 35760 1kbvA 327 3.12e+01 b.6.1.3 68395 b.6.1.3 68396 1iybA 208 3.15e+01 1bev2 248 3.16e+01 1aym2 1s5pA 235 3.18e+01 1v5lA 103 3.22e+01 1a87 321 3.23e+01 1a87 f.1.1.1 43380 1mc3A 296 3.47e+01 c.68.1.6 78943 1ex4A 239 3.48e+01 1b9dA b.34.7.1 24627 c.55.3.2 33670 1f0zA 66 3.48e+01 1f0zA d.15.3.2 37644 1ji3A 388 3.49e+01 c.69.1.18 77115 1fy9A 193 3.59e+01 1derA c.8.5.1 30779 1fsu 491 3.60e+01 1auk c.76.1.2 35032 1apo 42 3.64e+01 1edmB g.3.11.1 44240 1qdvA 99 3.64e+01 1t1dA d.42.1.2 38652 1i58A 189 3.66e+01 1b3qA d.122.1.3 61773 1aoiC 116 3.67e+01 1aoiC a.22.1.1 16440 1i5dA 191 3.67e+01 1b3qA d.122.1.3 61783 2hioA 128 3.69e+01 1aoiC a.22.1.1 16438 1hq3A 129 3.72e+01 1aoiC a.22.1.1 16434 1s32C 119 3.72e+01 1m19C 129 3.72e+01 a.22.1.1 78381 1kx5C 128 3.76e+01 a.22.1.1 77595 1fp6A 289 3.81e+01 1cp2A c.37.1.10 32243 1dk7A 146 3.85e+01 1derA c.8.5.1 30772 1tfr 305 3.87e+01 1tfr a.60.7.1 18081 c.120.1.2 33351 1fmmS 132 3.88e+01 1bfg b.42.1.1 59883 1kid 203 3.93e+01 1derA c.8.5.1 30771 1la1A 192 3.98e+01 c.8.5.1 73772 1jon 155 4.00e+01 1derA c.8.5.1 30780