# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qxrA 189 9.75e-01 1pjjA 271 1.06e+00 1nnjA 271 1.07e+00 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1j58A 385 1.14e+00 b.82.1.2 71531 1plzA 189 1.20e+00 b.82.1.7 88160 1cur 155 1.70e+00 1rcy b.6.1.1 23021 1caxB 184 2.16e+00 1caxB b.82.1.2 28105 1a3z 155 2.36e+00 1rcy b.6.1.1 23019 1rcy 151 2.38e+00 1rcy b.6.1.1 23018 1e30A 155 3.10e+00 1rcy b.6.1.1 23016 1cauB 184 3.55e+00 1caxB b.82.1.2 28103 1hxs2 272 3.82e+00 1qqp2 218 4.49e+00 1qqp2 1jl0A 334 4.66e+00 1jenA d.156.1.1 63155 1ep0A 185 4.88e+00 1dzrA b.82.1.1 28080 1h1iC 350 5.08e+00 b.82.1.5 76471 1h1iB 350 5.13e+00 b.82.1.5 76470 2eifA 136 5.44e+00 1bkb b.34.5.2 24607 b.40.4.5 25339 1cawB 184 5.57e+00 1caxB b.82.1.2 28113 1wpoA 256 5.90e+00 1lay b.57.1.1 27012 1h1iD 350 6.15e+00 b.82.1.5 76472 1pvc2 271 6.29e+00 1aym2 3dni 260 6.42e+00 3dni d.151.1.1 41791 1iyjB 817 6.47e+00 a.170.1.1 76948 a.171.1.1 76949 b.40.4.3 76950 b.40.4.3 76951 b.40.4.3 76952 1miuA 738 6.68e+00 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1juhA 350 6.72e+00 b.82.1.5 71884 1k9jA 139 7.72e+00 d.169.1.1 68353 1o59A 355 7.85e+00 1lr5A 163 8.71e+00 b.82.1.2 74215 1g4mA 393 8.72e+00 b.1.18.11 65143 b.1.18.11 65144 1afb1 154 9.09e+00 1rtm1 1dgrW 93 1.02e+01 1caxB 1dgrM 93 1.08e+01 1caxB b.82.1.2 28101 1jlxA 304 1.11e+01 1jlyA b.42.3.1 25583 b.42.3.1 25584 1fxzA 476 1.12e+01 b.82.1.2 65059 b.82.1.2 65060 1fzdA 201 1.16e+01 3fib d.171.1.1 42484 1hdhA 536 1.17e+01 c.76.1.2 65805 1jlyA 304 1.21e+01 1jlyA b.42.3.1 25587 b.42.3.1 25588 1egxA 115 1.21e+01 1evhA b.55.1.4 27000 1c8uA 285 1.21e+01 1c8uA d.38.1.3 38547 d.38.1.3 38548 1fpzA 212 1.25e+01 1fpzA c.45.1.1 59976 2pia 321 1.36e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1kv9A 668 1.46e+01 a.3.1.6 73056 b.70.1.1 73057 1gu7A 364 1.48e+01 b.35.1.2 83321 c.2.1.1 83322 1krhA 338 1.51e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1bkb 136 1.69e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1wpoB 256 1.71e+01 1lay b.57.1.1 27013 1pgl1 185 1.76e+01 1b4rA 80 1.82e+01 1b4rA b.1.3.1 22072 1gvhA 396 1.88e+01 a.1.1.2 70601 b.43.4.2 70602 c.25.1.5 70603 1h10A 125 1.96e+01 b.55.1.1 83446 1kxgA 152 2.09e+01 b.22.1.1 73145 1fi4A 416 2.11e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1fw9A 164 2.12e+01 1fw9A d.190.1.1 60059 1a7tA 232 2.15e+01 1a7tA d.157.1.1 42041 1dzrA 183 2.16e+01 1dzrA b.82.1.1 28076 2dnjA 260 2.20e+01 3dni d.151.1.1 41790 2itg 163 2.23e+01 1b9dA c.55.3.2 33669 1jenA 267 2.24e+01 1jenA 1k07A 263 2.31e+01 d.157.1.1 77218 1nxmA 197 2.39e+01 b.82.1.1 86385 1fxkC 133 2.43e+01 1fxkC a.2.5.1 15702 1m8uA 173 2.46e+01 1hqcA 324 2.48e+01 1hqcA a.4.5.11 16127 c.37.1.20 32424 6acn 754 2.51e+01 1amj c.8.2.1 30721 c.83.1.1 35397 1apf 49 2.55e+01 1ahl g.9.1.1 44602 7acn 754 2.57e+01 1amj c.8.2.1 30717 c.83.1.1 35393 1prxB 224 2.59e+01 1prxA c.47.1.10 33077 1c96A 753 2.60e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1fy7A 278 2.61e+01 1fy7A d.108.1.1 40817 1l0lB 439 2.64e+01 d.185.1.1 84484 d.185.1.1 84485 1bmv1 198 2.66e+01 1bmv1 1amj 754 2.71e+01 1amj c.8.2.1 30725 c.83.1.1 35401 1cskA 71 2.74e+01 1ckaA b.34.2.1 24513 1d7yA 408 2.75e+01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 8acn 754 2.75e+01 1amj c.8.2.1 30724 c.83.1.1 35400 1p32C 209 2.82e+01 1p32A d.25.1.1 38381 1i06A 180 2.87e+01 1mup b.60.1.1 27131 1df3A 162 2.88e+01 1mup b.60.1.1 27134 1cmiA 85 2.91e+01 1cmiA d.39.1.1 38551 1apo 42 2.91e+01 1edmB g.3.11.1 44240 1i05A 180 2.97e+01 1mup b.60.1.1 27130 1v5lA 103 3.00e+01 1hyvA 166 3.08e+01 1b9dA c.55.3.2 61424 1jdlA 121 3.12e+01 a.3.1.1 66557 1bpv 112 3.20e+01 1bpv b.1.2.1 22071 1azeA 56 3.21e+01 b.34.2.1 24536 1b9dA 163 3.23e+01 1b9dA c.55.3.2 33649 1qy1A 174 3.28e+01 1kb0A 677 3.35e+01 a.3.1.6 68378 b.70.1.1 68379 1bag 425 3.40e+01 1bag b.71.1.1 27720 c.1.8.1 28707 1jv4A 162 3.52e+01 b.60.1.1 67343 1n0xH 230 3.53e+01 1q02A 52 3.57e+01 1l0sA 90 3.60e+01 b.81.2.1 73408 1dqsA 393 3.76e+01 1dqsA e.22.1.1 43347 1mup 166 3.77e+01 1mup b.60.1.1 27133 1jh5A 144 3.78e+01 b.22.1.1 66697 1dmaA 214 3.85e+01 1aerA d.166.1.1 42251 1aerA 205 3.88e+01 1aerA d.166.1.1 42249 1a68 95 3.90e+01 1t1dA d.42.1.2 38639