# List of top-scoring protein chains for T0210.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gy1A 155 5.74e-03 b.6.1.1 70724 1a8z 153 7.82e-03 1rcy b.6.1.1 23020 1e30A 155 8.25e-03 1rcy b.6.1.1 23016 1a3z 155 8.30e-03 1rcy b.6.1.1 23019 1gy2A 155 8.31e-03 b.6.1.1 70726 1cur 155 8.40e-03 1rcy b.6.1.1 23021 1rcy 151 8.47e-03 1rcy b.6.1.1 23018 1qqp2 218 1.27e-01 1qqp2 1lo0H 220 5.41e-01 b.1.1.1 74115 b.1.1.2 74116 1uweH 218 1.42e+00 1fmd2 218 1.62e+00 1qqp2 1faiH 221 2.22e+00 1mfa b.1.1.1 19845 b.1.1.2 20949 1eoeA 100 2.61e+00 1t1dA d.42.1.2 38638 1ggaA 358 2.69e+00 1dssG c.2.1.3 30002 d.81.1.1 39917 2hioA 128 2.92e+00 1aoiC a.22.1.1 16438 1hq3A 129 2.92e+00 1aoiC a.22.1.1 16434 1t1dA 100 3.65e+00 1t1dA d.42.1.2 38637 1m19C 129 3.83e+00 a.22.1.1 78381 1kx5C 128 3.89e+00 a.22.1.1 77595 1eodA 100 3.90e+00 1t1dA d.42.1.2 38641 1gvhA 396 3.93e+00 a.1.1.2 70601 b.43.4.2 70602 c.25.1.5 70603 1eofA 100 3.97e+00 1t1dA d.42.1.2 38640 1hioA 95 3.99e+00 a.22.1.1 16439 1cm0A 168 4.07e+00 1yghA d.108.1.1 40800 1s32C 119 4.08e+00 1aoiC 116 4.09e+00 1aoiC a.22.1.1 16440 1fcdA 401 4.11e+00 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1a68 95 4.30e+00 1t1dA d.42.1.2 38639 1dzrA 183 4.60e+00 1dzrA b.82.1.1 28076 1j58A 385 4.79e+00 b.82.1.2 71531 1id3C 131 4.80e+00 a.22.1.1 66114 1de0A 289 5.48e+00 1cp2A c.37.1.10 32255 1sqlA 146 5.97e+00 1in8A 334 6.03e+00 1hqcA a.4.5.11 62605 c.37.1.20 62606 1lr5A 163 6.58e+00 b.82.1.2 74215 1e5dA 402 7.41e+00 1e5dA c.23.5.1 31208 d.157.1.3 42061 1a7fB 29 8.25e+00 g.1.1.1 43943 1adqH 225 8.27e+00 1igtB b.1.1.1 20273 b.1.1.2 21273 1igyB 434 8.59e+00 1igtB b.1.1.1 19769 b.1.1.2 20875 b.1.1.2 20876 b.1.1.2 20877 1p35A 299 8.91e+00 1p35A b.28.1.1 23925 1i4eA 300 8.95e+00 1p35A b.28.1.1 61685 1i3sA 298 9.05e+00 b.28.1.1 66021 1i3pA 298 9.14e+00 b.28.1.1 66020 1fljA 260 9.23e+00 2cba b.74.1.1 27954 1d02A 202 9.77e+00 1d02A c.52.1.8 33313 1fp6A 289 1.01e+01 1cp2A c.37.1.10 32243 1nz8A 119 1.01e+01 1pbyC 78 1.03e+01 1d2zB 153 1.19e+01 1d2zB a.77.1.2 18439 1kb9B 352 1.25e+01 d.185.1.1 77313 d.185.1.1 77314 1igfH 221 1.38e+01 1igtB b.1.1.1 19813 b.1.1.2 20923 1lzlA 323 1.44e+01 c.69.1.2 78306 1r9lA 309 1.45e+01 1ep0A 185 1.49e+01 1dzrA b.82.1.1 28080 1ygs 234 1.50e+01 1ygs b.26.1.1 23907 1vr2A 315 1.50e+01 1fgkA d.144.1.7 41701 1mr1A 235 1.55e+01 b.26.1.1 79418 1k7jA 206 1.57e+01 d.115.1.1 72103 1fyaA 193 1.58e+01 1derA c.8.5.1 30774 1autL 114 1.63e+01 1hcgB g.3.11.1 44244 g.3.11.1 44245 1kk9A 221 1.64e+01 d.115.1.1 77432 5gcnA 166 1.65e+01 1yghA d.108.1.1 40807 1mcvI 28 1.69e+01 g.3.2.1 78951 1fpzA 212 1.71e+01 1fpzA c.45.1.1 59976 1a87 321 1.75e+01 1a87 f.1.1.1 43380 1qsrA 162 1.78e+01 1yghA d.108.1.1 40805 1dd1A 268 1.80e+01 b.26.1.1 23908 1m1dA 163 1.80e+01 d.108.1.1 78397 1g88A 268 1.85e+01 1ygs b.26.1.1 23911 1pq4A 291 1.85e+01 1ixrC 312 1.86e+01 a.4.5.11 76930 c.37.1.20 76931 1qdvA 99 1.91e+01 1t1dA d.42.1.2 38652 1ixsB 318 1.93e+01 a.4.5.11 76933 c.37.1.20 76934 2let 28 1.96e+01 g.3.2.1 44072 1jlyA 304 1.98e+01 1jlyA b.42.3.1 25587 b.42.3.1 25588 2eti 28 1.98e+01 g.3.2.1 44073 1hqcA 324 1.99e+01 1hqcA a.4.5.11 16127 c.37.1.20 32424 1fsu 491 1.99e+01 1auk c.76.1.2 35032 1cdoA 374 2.08e+01 2ohxA b.35.1.2 24747 c.2.1.1 29763 1a3k 137 2.10e+01 1a3k b.29.1.3 24218 1evhA 112 2.20e+01 1evhA b.55.1.4 26997 1nkkA 256 2.20e+01 b.57.1.1 80567 1mpyA 307 2.21e+01 1mpyA d.32.1.3 38508 d.32.1.3 38509 1iecA 255 2.24e+01 1lay b.57.1.1 62319 1csn 298 2.24e+01 1csn d.144.1.7 41664 1bkzA 135 2.26e+01 1a3k b.29.1.3 24202 1mieH 228 2.26e+01 1id4A 256 2.27e+01 1lay b.57.1.1 62291 2csn 297 2.28e+01 1csn d.144.1.7 41665 1iegA 256 2.28e+01 1lay b.57.1.1 62326 1iedA 256 2.28e+01 1lay b.57.1.1 62321 1a78A 134 2.29e+01 1c1lA b.29.1.3 24212 1f0zA 66 2.30e+01 1f0zA d.15.3.2 37644 1njtA 256 2.36e+01 b.57.1.1 80555 1iefA 256 2.36e+01 1lay b.57.1.1 62324 1apf 49 2.40e+01 1ahl g.9.1.1 44602 2wpoA 256 2.40e+01 1lay b.57.1.1 27017 1jq6A 256 2.40e+01 b.57.1.1 63226 1wpoA 256 2.41e+01 1lay b.57.1.1 27012 1n0xH 230 2.42e+01 1lay 256 2.42e+01 1lay b.57.1.1 27014 1cmvA 256 2.43e+01 1lay b.57.1.1 27015 1fmmS 132 2.56e+01 1bfg b.42.1.1 59883 1q02A 52 2.57e+01 1gqzA 274 2.62e+01 d.21.1.1 83311 d.21.1.1 83312 1bz7B 217 2.68e+01 1igtB b.1.1.1 20403 b.1.1.2 21375 1sm3H 218 2.70e+01 1igtB b.1.1.1 20369 b.1.1.2 21361 1la1A 192 2.70e+01 c.8.5.1 73772 1mc3A 296 2.72e+01 c.68.1.6 78943 1uwgH 225 2.73e+01 1exbE 103 2.79e+01 1t1dA d.42.1.2 38643 1c24A 263 2.79e+01 1c24A d.127.1.1 41148 2matA 264 2.79e+01 1c24A d.127.1.1 41146 3matA 265 2.79e+01 1c24A d.127.1.1 41149 1dk7A 146 2.83e+01 1derA c.8.5.1 30772 1jon 155 2.87e+01 1derA c.8.5.1 30780 1qstA 160 2.89e+01 1yghA d.108.1.1 40804 1jb3A 131 2.89e+01 1jc7A b.40.3.2 62833 1jdlA 121 2.89e+01 a.3.1.1 66557 1jc7A 131 2.90e+01 1jc7A b.40.3.2 62873 4matA 278 2.93e+01 1c24A d.127.1.1 41150 1kid 203 2.94e+01 1derA c.8.5.1 30771 1pu6A 218 2.98e+01 1mat 264 2.99e+01 1c24A d.127.1.1 41152 1kbvA 327 2.99e+01 b.6.1.3 68395 b.6.1.3 68396 1bwzA 274 3.05e+01 1bwzA d.21.1.1 38337 d.21.1.1 38338 2hrpH 226 3.11e+01 1igtB b.1.1.1 20171 b.1.1.2 21195 1d5bB 221 3.14e+01 8fabA b.1.1.1 20205 b.1.1.2 21221 1axsB 221 3.15e+01 1mfa b.1.1.1 20201 b.1.1.2 21217 1fy9A 193 3.16e+01 1derA c.8.5.1 30779 4uagA 437 3.24e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1sbp 310 3.25e+01 1sbp c.94.1.1 35760 1apo 42 3.27e+01 1edmB g.3.11.1 44240 1in7A 334 3.28e+01 1hqcA a.4.5.11 62603 c.37.1.20 62604 1qxrA 189 3.42e+01 1f8yA 157 3.48e+01 1f8xA c.23.14.1 31395 1nyrA 645 3.66e+01 1f3tA 425 3.68e+01 7odcA b.49.2.3 26493 c.1.6.1 28655 1njjA 425 3.69e+01 1nj9B 215 3.73e+01 1m7dB 220 3.77e+01 b.1.1.1 84863 b.1.1.2 84864 1pz5B 220 3.78e+01 1srvA 145 3.79e+01 1derA c.8.5.1 30817 1rtvA 184 3.82e+01 2todA 425 3.83e+01 7odcA b.49.2.3 26489 c.1.6.1 28651 1cpo 299 3.90e+01 1cpo a.39.3.1 17390 a.39.3.1 17391 1in6A 334 3.91e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1j7kA 334 3.97e+01 1hqcA a.4.5.11 62695 c.37.1.20 62696 1g97A 459 3.97e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 1q44A 326 3.99e+01