# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j58A 385 4.07e-01 b.82.1.2 71531 1jlyA 304 1.18e+00 1jlyA b.42.3.1 25587 b.42.3.1 25588 1k07A 263 1.85e+00 d.157.1.1 77218 1miuA 738 2.30e+00 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1e30A 155 2.44e+00 1rcy b.6.1.1 23016 1rcy 151 2.52e+00 1rcy b.6.1.1 23018 1pjjA 271 3.28e+00 1nnjA 271 3.29e+00 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1qxrA 189 3.47e+00 1plzA 189 3.52e+00 b.82.1.7 88160 2pia 321 3.54e+00 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 3dni 260 5.26e+00 3dni d.151.1.1 41791 1lr5A 163 5.61e+00 b.82.1.2 74215 1fw9A 164 5.62e+00 1fw9A d.190.1.1 60059 1sviA 195 6.62e+00 1ojqA 212 7.05e+00 1fpzA 212 7.11e+00 1fpzA c.45.1.1 59976 1juhA 350 7.15e+00 b.82.1.5 71884 2eifA 136 7.43e+00 1bkb b.34.5.2 24607 b.40.4.5 25339 1aw8B 91 7.84e+00 1aw8B 1khiA 176 8.23e+00 b.34.5.2 77408 b.40.4.5 77409 1bkb 136 8.52e+00 1bkb b.34.5.2 24609 b.40.4.5 25341 1g1cA 99 1.02e+01 b.1.1.4 65078 1fy7A 278 1.09e+01 1fy7A d.108.1.1 40817 1pvc2 271 1.12e+01 1aym2 1s3iA 310 1.17e+01 1dgwA 178 1.24e+01 1dgwA b.82.1.2 28090 1pqhA 143 1.28e+01 1luqA 127 1.32e+01 1dqsA 393 1.35e+01 1dqsA e.22.1.1 43347 1pbyB 337 1.39e+01 1hynP 379 1.47e+01 1hynP d.112.1.2 61408 1m1zA 513 1.49e+01 c.26.2.1 78457 d.153.1.1 78458 1nxzA 246 1.51e+01 b.122.1.2 86391 c.116.1.5 86392 1swuA 127 1.67e+01 1swuA b.61.1.1 27230 1j7xA 302 1.68e+01 c.14.1.2 66425 2dnjA 260 1.72e+01 3dni d.151.1.1 41790 1a7tA 232 1.74e+01 1a7tA d.157.1.1 42041 1cskA 71 2.03e+01 1ckaA b.34.2.1 24513 2gar 212 2.33e+01 2gar c.65.1.1 34161 1thv 207 2.44e+01 1thv b.25.1.1 23904 1kwnA 207 2.48e+01 b.25.1.1 77568 1rqwA 207 2.52e+01 8acn 754 2.57e+01 1amj c.8.2.1 30724 c.83.1.1 35400 1ep0A 185 2.62e+01 1dzrA b.82.1.1 28080 1c96A 753 2.65e+01 1amj c.8.2.1 30727 c.83.1.1 35403 2phlA 397 2.76e+01 1dgwA b.82.1.2 28082 b.82.1.2 28083 1ygs 234 2.86e+01 1ygs b.26.1.1 23907 1dkiA 371 2.89e+01 1dkiA d.3.1.1 37090 1p1jA 533 2.97e+01 c.2.1.3 87687 d.81.1.3 87688 1t1dA 100 3.00e+01 1t1dA d.42.1.2 38637 1l0lB 439 3.01e+01 d.185.1.1 84484 d.185.1.1 84485 1fi4A 416 3.02e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1h1yA 228 3.07e+01 c.1.2.2 76506 1lo6A 223 3.18e+01 b.47.1.2 74143 1v5lA 103 3.33e+01 1f6bA 198 3.35e+01 c.37.1.8 64986 1ef1A 294 3.35e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1h10A 125 3.42e+01 b.55.1.1 83446 1a68 95 3.44e+01 1t1dA d.42.1.2 38639 1g24A 211 3.54e+01 1g24A d.166.1.1 42270 1r4pA 297 3.54e+01 1wpoA 256 3.55e+01 1lay b.57.1.1 27012 1n6aA 259 3.61e+01 b.76.2.1 80121 b.85.7.1 80122 1vhyA 257 3.65e+01 1k9jA 139 3.80e+01 d.169.1.1 68353 1fit 147 3.84e+01 1fit d.13.1.1 37499 1pz7A 204 3.96e+01