# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j58A 385 5.70e-02 b.82.1.2 71531 1qxrA 189 7.92e-01 1plzA 189 7.97e-01 b.82.1.7 88160 1ep0A 185 1.18e+00 1dzrA b.82.1.1 28080 1lr5A 163 1.25e+00 b.82.1.2 74215 1rcy 151 1.35e+00 1rcy b.6.1.1 23018 1jlyA 304 1.41e+00 1jlyA b.42.3.1 25587 b.42.3.1 25588 1pjjA 271 1.50e+00 1nnjA 271 1.51e+00 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1e30A 155 1.59e+00 1rcy b.6.1.1 23016 1fpzA 212 1.59e+00 1fpzA c.45.1.1 59976 1qqp2 218 2.31e+00 1qqp2 1wpoA 256 2.34e+00 1lay b.57.1.1 27012 1k07A 263 2.77e+00 d.157.1.1 77218 1juhA 350 3.87e+00 b.82.1.5 71884 2pia 321 3.91e+00 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1pvc2 271 4.18e+00 1aym2 1miuA 738 4.94e+00 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1j7xA 302 7.03e+00 c.14.1.2 66425 1gu7A 364 7.15e+00 b.35.1.2 83321 c.2.1.1 83322 1c8uA 285 8.32e+00 1c8uA d.38.1.3 38547 d.38.1.3 38548 1pgl1 185 8.73e+00 1bmv1 198 9.19e+00 1bmv1 1nxmA 197 1.07e+01 b.82.1.1 86385 1dqsA 393 1.28e+01 1dqsA e.22.1.1 43347 1qwiA 143 1.28e+01 1fi4A 416 1.36e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 8acn 754 1.45e+01 1amj c.8.2.1 30724 c.83.1.1 35400 2eifA 136 1.46e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1c96A 753 1.47e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1k7jA 206 1.48e+01 d.115.1.1 72103 1khiA 176 1.50e+01 b.34.5.2 77408 b.40.4.5 77409 1hdhA 536 1.50e+01 c.76.1.2 65805 1v5lA 103 1.52e+01 1g1cA 99 1.53e+01 b.1.1.4 65078 1afb1 154 1.54e+01 1rtm1 1a68 95 1.54e+01 1t1dA d.42.1.2 38639 1ckiA 317 1.63e+01 1csn d.144.1.7 41660 1n0xH 230 1.64e+01 1l0lB 439 1.64e+01 d.185.1.1 84484 d.185.1.1 84485 1bkb 136 1.74e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1aerA 205 1.75e+01 1aerA d.166.1.1 42249 8pchA 220 1.76e+01 1cs8A 1nxzA 246 1.81e+01 b.122.1.2 86391 c.116.1.5 86392 3dni 260 1.86e+01 3dni d.151.1.1 41791 1jdlA 121 1.94e+01 a.3.1.1 66557 1kyqA 274 2.03e+01 c.2.1.11 73281 e.37.1.1 73282 1a7tA 232 2.05e+01 1a7tA d.157.1.1 42041 1kxgA 152 2.14e+01 b.22.1.1 73145 1g4mA 393 2.16e+01 b.1.18.11 65143 b.1.18.11 65144 1h10A 125 2.24e+01 b.55.1.1 83446 1t1dA 100 2.25e+01 1t1dA d.42.1.2 38637 1vhyA 257 2.31e+01 1o59A 355 2.40e+01 1b4rA 80 2.47e+01 1b4rA b.1.3.1 22072 1r9lA 309 2.52e+01 1ygs 234 2.64e+01 1ygs b.26.1.1 23907 1mu5A 471 2.64e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1m1zA 513 2.65e+01 c.26.2.1 78457 d.153.1.1 78458 1m8uA 173 2.70e+01 1dgwY 93 2.72e+01 1caxB 1cmiA 85 2.76e+01 1cmiA d.39.1.1 38551 1h1yA 228 2.76e+01 c.1.2.2 76506 1mwxA 646 2.91e+01 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1k9jA 139 2.97e+01 d.169.1.1 68353 1jl0A 334 3.09e+01 1jenA d.156.1.1 63155 1fcdA 401 3.11e+01 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1o4tA 133 3.25e+01 b.82.1.9 86622 1dzkA 157 3.31e+01 1obpA b.60.1.1 27096 1kv9A 668 3.32e+01 a.3.1.6 73056 b.70.1.1 73057 1d3yA 301 3.36e+01 1d3yA e.12.1.1 43252 1oihA 301 3.43e+01 1iwlA 182 3.60e+01 b.125.1.1 83757 1r94A 118 3.61e+01 1el6A 219 3.63e+01 1el6B d.182.1.1 42606 1fljA 260 3.66e+01 2cba b.74.1.1 27954