# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j58A 385 2.07e-03 b.82.1.2 71531 1plzA 189 8.78e-02 b.82.1.7 88160 1juhA 350 1.01e-01 b.82.1.5 71884 1qxrA 189 1.25e-01 1jlyA 304 1.59e-01 1jlyA b.42.3.1 25587 b.42.3.1 25588 1bkb 136 2.92e-01 1bkb b.34.5.2 24609 b.40.4.5 25341 8acn 754 3.16e-01 1amj c.8.2.1 30724 c.83.1.1 35400 1c96A 753 3.49e-01 1amj c.8.2.1 30727 c.83.1.1 35403 1fpzA 212 3.53e-01 1fpzA c.45.1.1 59976 1e30A 155 5.99e-01 1rcy b.6.1.1 23016 1rcy 151 6.52e-01 1rcy b.6.1.1 23018 1ep0A 185 6.63e-01 1dzrA b.82.1.1 28080 1lr5A 163 7.33e-01 b.82.1.2 74215 1nxmA 197 1.37e+00 b.82.1.1 86385 1k07A 263 1.72e+00 d.157.1.1 77218 1khiA 176 1.89e+00 b.34.5.2 77408 b.40.4.5 77409 1ibyA 112 2.32e+00 1ibzA b.6.1.4 62233 2pia 321 3.17e+00 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1qqp2 218 3.26e+00 1qqp2 1ofnA 205 3.37e+00 1j1tA 233 3.50e+00 1pjjA 271 4.01e+00 1nnjA 271 4.03e+00 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1oi6A 205 4.73e+00 1miuA 738 5.15e+00 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1kb0A 677 5.27e+00 a.3.1.6 68378 b.70.1.1 68379 1aerA 205 5.41e+00 1aerA d.166.1.1 42249 1n6aA 259 5.45e+00 b.76.2.1 80121 b.85.7.1 80122 1viuA 203 5.46e+00 1dgwA 178 5.46e+00 1dgwA b.82.1.2 28090 1fsu 492 5.63e+00 1auk c.76.1.2 35032 1kv9A 668 5.89e+00 a.3.1.6 73056 b.70.1.1 73057 1q45A 391 5.90e+00 1jofA 365 6.20e+00 b.69.10.1 71775 1o7nB 194 6.22e+00 d.17.4.4 81164 1g38A 393 6.42e+00 2admA c.66.1.27 60235 1e1aA 314 6.47e+00 1e1aA b.68.6.1 59155 1pjxA 314 6.47e+00 2phlA 397 7.20e+00 1dgwA b.82.1.2 28082 b.82.1.2 28083 1ahl 49 7.35e+00 1ahl g.9.1.1 44601 1m1zA 513 7.46e+00 c.26.2.1 78457 d.153.1.1 78458 1o8uA 257 7.46e+00 c.14.1.3 81194 1j7xA 302 7.62e+00 c.14.1.2 66425 1pbyA 489 8.12e+00 1h1yA 228 8.18e+00 c.1.2.2 76506 1c8uA 285 8.55e+00 1c8uA d.38.1.3 38547 d.38.1.3 38548 1gpr 162 8.85e+00 1gpr b.84.3.1 28267 1dgwY 93 9.10e+00 1caxB 2eifA 136 9.68e+00 1bkb b.34.5.2 24607 b.40.4.5 25339 1g4mA 393 9.88e+00 b.1.18.11 65143 b.1.18.11 65144 1nls 237 1.09e+01 1nls b.29.1.1 23928 1fxkC 133 1.12e+01 1fxkC a.2.5.1 15702 1cmiA 85 1.14e+01 1cmiA d.39.1.1 38551 1b9mA 265 1.20e+01 1b9mA a.4.5.8 16118 b.40.6.2 58938 b.40.6.2 58939 1m8uA 173 1.29e+01 1a7tA 232 1.35e+01 1a7tA d.157.1.1 42041 1evhA 112 1.49e+01 1evhA b.55.1.4 26997 1qwiA 143 1.53e+01 1h10A 125 1.57e+01 b.55.1.1 83446 1h8eA 510 1.60e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1dqsA 393 1.65e+01 1dqsA e.22.1.1 43347 1o4tA 133 1.67e+01 b.82.1.9 86622 1iz6A 138 1.69e+01 b.34.5.2 76976 b.40.4.5 76977 1pgl1 185 1.74e+01 1hyvA 166 1.76e+01 1b9dA c.55.3.2 61424 1bob 320 1.78e+01 1bob d.108.1.1 40816 1j1jA 240 1.83e+01 1e9gA 286 1.83e+01 1wgjA b.40.5.1 59393 1iscA 192 1.84e+01 1avmA a.2.11.1 15733 d.44.1.1 38726 1bhdA 118 1.89e+01 1bkrA a.40.1.1 17398 1k9jA 139 1.97e+01 d.169.1.1 68353 1rpxA 230 1.99e+01 1rpxA c.1.2.2 28536 1bl3A 160 2.08e+01 1b9dA c.55.3.2 33655 1fukA 165 2.15e+01 1fukA c.37.1.19 32409 1e79A 510 2.18e+01 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1ogsA 497 2.19e+01 b.71.1.2 86997 c.1.8.3 86998 1rqwA 207 2.20e+01 1eg9B 194 2.20e+01 1ndoB d.17.4.4 38120 1dixA 208 2.21e+01 1bk7A d.124.1.1 41122 1pl4A 198 2.29e+01 1rhfA 182 2.37e+01 1cskA 71 2.40e+01 1ckaA b.34.2.1 24513 1n0nA 199 2.48e+01 a.2.11.1 79750 d.44.1.1 79751 1ap6A 198 2.49e+01 1avmA a.2.11.1 15746 d.44.1.1 38705 1kbvA 327 2.49e+01 b.6.1.3 68395 b.6.1.3 68396 1jdlA 121 2.51e+01 a.3.1.1 66557 1fi4A 416 2.52e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1thv 207 2.52e+01 1thv b.25.1.1 23904 1wdcC 156 2.53e+01 1wdcC a.39.1.5 17317 1kwnA 207 2.53e+01 b.25.1.1 77568 1lox 662 2.56e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1ld8B 437 2.58e+01 a.102.4.3 73839 1o59A 355 2.62e+01 2camA 127 2.66e+01 1swuA b.61.1.1 27407 1sbp 310 2.67e+01 1sbp c.94.1.1 35760 1v3wA 173 2.70e+01 1d2oA 187 2.73e+01 1d2oA b.3.5.1 22625 b.3.5.1 22626 1f7dA 136 2.76e+01 1dun b.85.4.1 28353 1pbyB 337 2.79e+01 1fw9A 164 2.80e+01 1fw9A d.190.1.1 60059 1q1fA 151 2.80e+01 1obpA 159 2.80e+01 1obpA b.60.1.1 27092 1r1dA 247 2.82e+01 1l0lB 439 2.83e+01 d.185.1.1 84484 d.185.1.1 84485 1qgvA 142 2.89e+01 1qgvA c.47.1.8 33056 1cdy 178 2.90e+01 1cdy b.1.1.1 19719 b.1.1.3 21658 1r4pA 297 3.08e+01 1mu5A 471 3.11e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1bmv1 198 3.15e+01 1bmv1 2sns 149 3.19e+01 1snc b.40.1.1 24860 1itg 166 3.20e+01 1b9dA c.55.3.2 33661 1rdj1 113 3.21e+01 1rtm1 1rdo1 113 3.21e+01 1rtm1 1afb1 154 3.27e+01 1rtm1 1iybA 208 3.29e+01 1rl2A 137 3.40e+01 1rl2A b.34.5.3 24610 b.40.4.5 25342 1jyoA 130 3.41e+01 d.198.1.1 67483 1ew0A 130 3.51e+01 1drmA d.110.3.2 40905 1ckiA 317 3.53e+01 1csn d.144.1.7 41660 1i05A 180 3.55e+01 1mup b.60.1.1 27130 2btvA 901 3.65e+01 2btvA e.28.1.1 43376 1i06A 180 3.67e+01 1mup b.60.1.1 27131 1ne6A 283 3.72e+01 1op3H 225 3.74e+01 b.1.1.1 87208 b.1.1.2 87209 1od5A 492 3.91e+01 b.82.1.2 86832 b.82.1.2 86833 2pvaA 345 3.93e+01 3pvaA d.153.1.3 41850 1mqeA 207 3.95e+01 1i50A 1733 3.98e+01 e.29.1.1 61754 1ka1A 357 3.99e+01 e.7.1.1 68369