# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j58A 385 5.81e-02 b.82.1.2 71531 1juhA 350 3.41e-01 b.82.1.5 71884 1in4A 334 4.22e-01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1rcy 151 6.10e-01 1rcy b.6.1.1 23018 1e30A 155 6.59e-01 1rcy b.6.1.1 23016 1in6A 334 1.08e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 1ep0A 185 1.28e+00 1dzrA b.82.1.1 28080 1pxwA 128 2.32e+00 1mp8A 281 2.86e+00 1k7jA 206 3.39e+00 d.115.1.1 72103 1ej6D 418 3.64e+00 i.7.1.1 45970 1evhA 112 5.54e+00 1evhA b.55.1.4 26997 1qwlA 505 5.78e+00 1gqzA 274 6.48e+00 d.21.1.1 83311 d.21.1.1 83312 1q44A 326 6.78e+00 1bwzA 274 6.84e+00 1bwzA d.21.1.1 38337 d.21.1.1 38338 1dmhA 311 7.72e+00 1dmhA b.3.6.1 22633 1q33A 292 8.41e+00 1f7sA 139 8.85e+00 1cof d.109.1.2 40857 1sbp 310 9.06e+00 1sbp c.94.1.1 35760 1kwnA 207 1.04e+01 b.25.1.1 77568 1n93X 375 1.07e+01 1wpoA 256 1.09e+01 1lay b.57.1.1 27012 1thv 207 1.31e+01 1thv b.25.1.1 23904 1khxA 227 1.41e+01 b.26.1.1 68631 1ojxA 263 1.46e+01 1q7bA 244 1.50e+01 1p35A 299 1.54e+01 1p35A b.28.1.1 23925 1h1yA 228 1.61e+01 c.1.2.2 76506 1kyqA 274 1.62e+01 c.2.1.11 73281 e.37.1.1 73282 4uagA 437 1.70e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1rqwA 207 1.74e+01 1od5A 492 1.98e+01 b.82.1.2 86832 b.82.1.2 86833 1auvA 311 2.10e+01 1auvA c.30.1.5 31723 d.142.1.3 41558 1m98A 317 2.12e+01 a.175.1.1 78866 d.17.4.6 78867 1lr5A 163 2.14e+01 b.82.1.2 74215 12asA 330 2.21e+01 12asA d.104.1.1 40783 4pfk 319 2.25e+01 3pfk c.89.1.1 35582 1ecpA 238 2.32e+01 1ecpA c.56.2.1 33775 1dszB 85 2.34e+01 2nllB g.39.1.2 45108 1aerA 205 2.37e+01 1aerA d.166.1.1 42249 1qxrA 189 2.37e+01 1fljA 260 2.40e+01 2cba b.74.1.1 27954 1k6dA 220 2.41e+01 c.63.1.2 72082 1fl1A 230 2.51e+01 1at3A b.57.1.1 27023 1lkkA 105 2.56e+01 1lckA d.93.1.1 40412 8acn 754 2.62e+01 1amj c.8.2.1 30724 c.83.1.1 35400 2phlA 397 2.68e+01 1dgwA b.82.1.2 28082 b.82.1.2 28083 1ihoA 283 2.69e+01 1ihoA c.26.1.4 62390 1t9kA 347 2.74e+01 1m7bA 184 2.75e+01 c.37.1.8 74572 1jlyA 304 2.78e+01 1jlyA b.42.3.1 25587 b.42.3.1 25588 1kbvA 327 2.79e+01 b.6.1.3 68395 b.6.1.3 68396 1q02A 52 2.95e+01 1plzA 189 3.00e+01 b.82.1.7 88160 1k32A 1045 3.08e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1i52A 236 3.15e+01 1i52A c.68.1.13 61767 1ouoA 210 3.20e+01 1qwzA 235 3.32e+01 1k9sA 237 3.40e+01 c.56.2.1 68359 1oj4A 283 3.44e+01 1c96A 753 3.69e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1nxmA 197 3.70e+01 b.82.1.1 86385 1pea 385 3.73e+01 1pea c.93.1.1 35662 1cqxA 403 3.90e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1a6q 382 3.93e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1cruA 454 3.96e+01 1c9uA b.68.2.1 27617