PFRMAT RR
TARGET T0210
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length
REMARK or to a limited set of high scoring pairs.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGE
VSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFL
VPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAV
VQKLSRPEVN
107 132 0 8 0.49725
57 132 0 8 0.3859
71 120 0 8 0.3757
58 108 0 8 0.3757
57 121 0 8 0.3434
58 107 0 8 0.34085
54 123 0 8 0.34085
57 107 0 8 0.30685
54 144 0 8 0.28135
108 131 0 8 0.27965
54 108 0 8 0.2771
28 60 0 8 0.25755
73 107 0 8 0.24905
64 124 0 8 0.2465
97 110 0 8 0.2448
108 117 0 8 0.2363
54 117 0 8 0.2346
107 121 0 8 0.2261
64 122 0 8 0.21845
26 124 0 8 0.19975
34 86 0 8 0.1972
26 60 0 8 0.1972
107 117 0 8 0.1955
64 120 0 8 0.1955
66 124 0 8 0.1921
73 108 0 8 0.1802
91 107 0 8 0.1717
END