# List of top-scoring protein chains for T0209.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b87A 181 4.65e-02 1b87A d.108.1.1 40797 1n71A 180 4.68e-02 d.108.1.1 85370 1mg7A 417 1.40e+00 d.14.1.6 84954 d.58.26.6 84955 1o6xA 81 3.32e+00 d.58.3.1 81105 1pv8A 330 3.98e+00 c.1.10.3 -5504 1e51A 330 4.01e+00 1b4kA c.1.10.3 59254 1kgiA 127 5.18e+00 b.3.4.1 77388 1f42A 306 5.33e+00 1f42A b.1.1.4 59636 b.1.2.1 59637 b.1.2.1 59638 1rz3A 201 5.35e+00 c.37.1.6 -7048 1r2zA 274 8.35e+00 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1l1zA 274 8.40e+00 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1nz2A 153 9.51e+00 a.1.1.2 86437 1jmg 316 1.02e+01 1bkpA d.117.1.1 41008 1njd 316 1.04e+01 1bkpA d.117.1.1 41004 1gkeA 120 1.06e+01 1etb1 b.3.4.1 22619 1nepA 130 1.07e+01 b.1.18.7 80440 1tsy 316 1.09e+01 1bkpA d.117.1.1 40990 1p6gS 91 1.10e+01 i.1.1.1 87837 1tsx 316 1.10e+01 1bkpA d.117.1.1 41002 1bpjA 316 1.13e+01 1bkpA d.117.1.1 40996 1a06 332 1.14e+01 1tkiA d.144.1.7 41634 1obbA 480 1.16e+01 c.2.1.5 86760 d.162.1.2 86761 1bo8A 316 1.16e+01 1bkpA d.117.1.1 40994 1bo7A 316 1.17e+01 1bkpA d.117.1.1 40997 1tsw 316 1.18e+01 1bkpA d.117.1.1 40991 1bp6A 316 1.19e+01 1bkpA d.117.1.1 41000 1nje 316 1.20e+01 1bkpA d.117.1.1 41001 1tvv 316 1.21e+01 1bkpA d.117.1.1 40998 1dun 134 1.21e+01 1dun b.85.4.1 28371 1bp0A 316 1.21e+01 1bkpA d.117.1.1 40993 1fi8A 228 1.22e+01 5ptp b.47.1.2 26374 1tdb 315 1.23e+01 1bkpA d.117.1.1 41025 1jmi 316 1.24e+01 1bkpA d.117.1.1 41006 1f7dA 136 1.25e+01 1dun b.85.4.1 28353 1vza 316 1.27e+01 1bkpA d.117.1.1 41017 1jmh 316 1.28e+01 1bkpA d.117.1.1 41009 1v6sA 390 1.32e+01 c.86.1.1 -8567 1vze 316 1.32e+01 1bkpA d.117.1.1 41003 1jmf 316 1.33e+01 1bkpA d.117.1.1 41007 1o7tA 309 1.33e+01 c.94.1.1 86645 1r1nA 309 1.35e+01 c.94.1.1 -8659 1d9yA 309 1.35e+01 1mrp c.94.1.1 35798 1l0lI 78 1.36e+01 d.184.1.3 84495 1shsA 147 1.41e+01 1shsA b.15.1.1 23675 1udkA 51 1.47e+01 g.3.14.1 -12520 1nz3A 153 1.50e+01 a.1.1.2 86438 2trhA 127 1.67e+01 1etb1 b.3.4.1 22587 1howA 373 1.71e+01 1hcl d.144.1.7 41679 1q8yA 373 1.74e+01 d.144.1.7 -11319 1mmfB 194 1.83e+01 c.51.3.1 85019 1iwpB 194 1.83e+01 c.51.3.1 76885 1gjnA 153 1.86e+01 a.1.1.2 70191 8i1b 152 1.87e+01 2i1b b.42.1.2 25550 1hrm 153 1.88e+01 1a6m a.1.1.2 15193 1g0uD 241 1.99e+01 d.153.1.4 41949 1rse 153 2.00e+01 1a6m a.1.1.2 15196 1vicA 262 2.05e+01 c.68.1.13 -8252 1xch 153 2.05e+01 1a6m a.1.1.2 15194 5ttrA 127 2.14e+01 1etb1 b.3.4.1 22603 1dvzA 124 2.20e+01 1etb1 b.3.4.1 22567 2pabA 127 2.21e+01 1etb1 b.3.4.1 22597 1kobA 387 2.25e+01 1tkiA d.144.1.7 41640 1gkoA 127 2.26e+01 b.3.4.1 65252 1ijnA 127 2.28e+01 b.3.4.1 83691 1iikA 127 2.28e+01 b.3.4.1 76746 1g1oA 127 2.33e+01 b.3.4.1 65080 1ttbA 127 2.38e+01 1etb1 b.3.4.1 22543 1nmmA 123 2.38e+01 d.2.1.2 80661 1bzdA 127 2.40e+01 1etb1 b.3.4.1 22575 1ttrA 127 2.40e+01 1etb1 b.3.4.1 22555 1f41A 127 2.40e+01 1etb1 b.3.4.1 22539 1fhnA 127 2.42e+01 1etb1 b.3.4.1 59842 1bz8A 126 2.42e+01 1etb1 b.3.4.1 22591 1tshA 127 2.46e+01 1etb1 b.3.4.1 22549 1d2nA 272 2.48e+01 1d2nA c.37.1.20 32428 1nsf 273 2.49e+01 1d2nA c.37.1.20 32429 1bje 153 2.60e+01 1a6m a.1.1.2 15197 1a0qL 212 2.75e+01 8fabA b.1.1.1 20286 b.1.1.2 21278 1o8bA 219 2.80e+01 unknown_sccs 81180 d.58.40.1 81181 1qcrI 28 2.90e+01 1vf5D 179 2.97e+01 b.33.1.1 -3541 f.23.12.1 -12138 1mbs 153 2.99e+01 1a6m a.1.1.2 15156 1myiA 153 3.16e+01 1a6m a.1.1.2 15175 1ttcA 127 3.18e+01 1etb1 b.3.4.1 22551 2tryA 127 3.23e+01 1etb1 b.3.4.1 22595 1ui9A 122 3.26e+01 d.79.1.2 88496 1qwjA 229 3.26e+01 c.68.1.13 -8255 1as4A 341 3.38e+01 1sek e.1.1.1 42623 1gzkA 315 3.44e+01 d.144.1.7 83406 1ovaA 386 3.51e+01 1ovaA e.1.1.1 42619 1ufyA 122 3.52e+01 d.79.1.2 88489 3caaA 341 3.57e+01 1c8oA e.1.1.1 42625 1jtiA 385 3.61e+01 e.1.1.1 63280 4caaA 341 3.76e+01 1sek e.1.1.1 42627 1r13A 148 3.80e+01 d.169.1.1 -11646 h.1.1.1 -12895 1mwcA 153 3.87e+01 1a6m a.1.1.2 15157 1bax 94 3.91e+01 1bax a.61.1.3 18133 1yma 153 3.91e+01 1a6m a.1.1.2 15202 1fi8C 84 3.91e+01 1sluA b.16.1.1 23693