# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jhnA 424 1.69e-01 b.29.1.12 70060 b.104.1.1 66722 1h3gA 601 3.06e-01 b.1.18.2 -2725 b.71.1.1 -4653 c.1.8.1 -5277 1uc2A 481 3.07e-01 unknown_sccs -11725 1bteA 97 1.60e+00 1bteA g.7.1.3 44463 1n9pA 207 2.02e+00 b.1.18.16 80343 1m42A 102 3.32e+00 b.1.18.17 78597 1uypA 432 4.63e+00 unknown_sccs -3480 unknown_sccs -4554 1utwA 432 5.13e+00 1bn6A 294 5.21e+00 1bn6A c.69.1.8 34678 1sfp 114 5.25e+00 1sfp b.23.1.1 23895 1dkxA 219 6.20e+00 1dkzA unknown_sccs -446 unknown_sccs -3061 1bpr 191 6.45e+00 1dkzA unknown_sccs 43319 1bt4A 362 6.79e+00 1bjnA c.67.1.4 34468 1r7aA 504 7.00e+00 b.71.1.1 -4664 c.1.8.1 -5283 1qwlA 505 7.04e+00 e.5.1.1 -11823 1hxn 219 7.48e+00 1hxn b.66.1.1 27529 1br2A 791 8.22e+00 1lvk b.34.3.1 24558 c.37.1.9 32155 1sixA 174 8.33e+00 b.85.4.1 -5030 1l9mA 692 8.39e+00 b.1.18.9 73732 b.1.5.1 73733 b.1.5.1 73734 d.3.1.4 73735 1cqwA 295 8.65e+00 1b6g c.69.1.8 34679 1hkhA 279 8.80e+00 c.69.1.12 -8342 1dkzA 219 9.28e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1rllA 692 9.30e+00 1bn7A 294 1.05e+01 1bn6A c.69.1.8 34677 1dw9A 156 1.06e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1dwkA 156 1.06e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1obbA 480 1.08e+01 c.2.1.5 86760 d.162.1.2 86761 1dgnA 89 1.13e+01 1dgnA a.77.1.3 18436 1bvzA 585 1.20e+01 1bvzA b.1.18.2 21856 b.71.1.1 27783 c.1.8.1 28770 1rybA 212 1.34e+01 c.56.3.1 -7858 1m6kA 251 1.37e+01 e.3.1.1 78695 1vjjA 692 1.48e+01 b.1.18.9 -2758 b.1.5.1 -2786 b.1.5.1 -2787 d.3.1.4 -8893 1iv8A 720 1.59e+01 b.71.1.1 76842 c.1.8.1 76843 1s3iA 310 1.68e+01 b.46.1.1 -4111 c.65.1.1 -8042 1vi9A 299 1.77e+01 c.72.1.5 -8393 1ad2 228 1.78e+01 1ad2 e.24.1.1 43353 1szwA 379 1.79e+01 unknown_sccs -10164 2madH 373 1.82e+01 2bbkH b.69.2.1 27639 1hsbA 270 2.00e+01 1agdA b.1.1.2 20736 d.19.1.1 38257 1rypE 242 2.09e+01 1rypE d.153.1.4 41936 1a88A 275 2.10e+01 1brt c.69.1.12 34707 1qi9A 556 2.16e+01 1qhbA a.111.1.2 19053 1s48A 609 2.16e+01 e.8.1.4 -11955 1i74A 309 2.17e+01 1i74A c.107.1.1 61867 1po0A 751 2.19e+01 f.4.3.3 -12363 1dgfA 497 2.23e+01 1cf9A e.5.1.1 42782 1si7A 369 2.36e+01 unknown_sccs -10163 1tmcA 175 2.39e+01 1agdA d.19.1.1 38258 1flrL 219 2.42e+01 8fabA b.1.1.1 19904 b.1.1.2 20998 1fs7A 485 2.45e+01 1qdbA a.138.1.3 19691 1au1A 166 2.45e+01 1ifa a.26.1.3 16889 1kqfB 294 2.47e+01 d.58.1.5 75900 f.23.22.1 75901 1jpeA 151 2.53e+01 b.1.17.1 77146 1n9bA 265 2.54e+01 e.3.1.1 85463 2cavA 445 2.56e+01 1dgwA b.82.1.2 28094 b.82.1.2 28095 1ji2A 585 2.56e+01 b.1.18.2 71672 b.71.1.1 71673 c.1.8.1 71674 1d2nA 272 2.61e+01 1d2nA c.37.1.20 32428 1hn0A 1021 2.66e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1cxyA 90 2.70e+01 1cyo d.120.1.1 41085 1rz3A 201 2.78e+01 c.37.1.6 -7048 1p2zA 968 2.79e+01 b.121.2.2 -3020 b.121.2.2 -3021 1fzvA 132 2.80e+01 1vpfA g.17.1.1 60159 1l6pA 125 2.81e+01 b.1.17.1 73626 1jm1A 204 2.93e+01 b.33.1.1 71745 1pioA 257 2.93e+01 1btl e.3.1.1 42719 1taq 832 3.01e+01 1taq a.60.7.1 18082 c.120.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1p94A 76 3.02e+01 unknown_sccs -916 1itxA 419 3.02e+01 c.1.8.5 71425 d.26.3.1 71426 1mq7A 154 3.10e+01 b.85.4.1 79404 1q38A 89 3.11e+01 b.1.2.1 -2765 1m5zA 91 3.17e+01 b.36.1.1 78676 1aohA 147 3.19e+01 1aohA b.2.2.2 22401 1hl9A 449 3.25e+01 unknown_sccs -4694 unknown_sccs -5365 1lnh 857 3.29e+01 1yge a.119.1.1 19237 b.12.1.1 23637 1kyaA 499 3.33e+01 b.6.1.3 73203 b.6.1.3 73204 b.6.1.3 73205 1odkA 235 3.40e+01 c.56.2.1 86863 1kk6A 209 3.42e+01 b.81.1.3 68657 1yge 839 3.56e+01 1yge a.119.1.1 19234 b.12.1.1 23634 1na3A 91 3.61e+01 k.38.1.1 85481 1qniA 581 3.64e+01 1qniA b.6.1.4 23042 b.69.3.1 27642 1ibjA 464 3.64e+01 1ibjA c.67.1.3 62162 1dc1A 323 3.68e+01 1dc1A c.52.1.11 33321 1rovA 857 3.69e+01 a.119.1.1 -1656 b.12.1.1 -3034 1dgrC 178 3.73e+01 1dgwA b.82.1.2 28100 2bidA 197 3.83e+01 2bidA f.1.4.1 43398 1dghB 498 3.83e+01 1cf9A e.5.1.1 42791 1i1jA 108 3.86e+01 1i1jA b.34.2.1 61531