# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jhnA 424 5.94e-01 b.29.1.12 70060 b.104.1.1 66722 1uc2A 481 7.88e-01 unknown_sccs -11725 1ji2A 585 1.75e+00 b.1.18.2 71672 b.71.1.1 71673 c.1.8.1 71674 1bvzA 585 1.82e+00 1bvzA b.1.18.2 21856 b.71.1.1 27783 c.1.8.1 28770 1h3gA 601 1.84e+00 b.1.18.2 -2725 b.71.1.1 -4653 c.1.8.1 -5277 1m42A 102 3.50e+00 b.1.18.17 78597 1sixA 174 4.02e+00 b.85.4.1 -5030 1taq 832 4.18e+00 1taq a.60.7.1 18082 c.120.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1mq7A 154 4.41e+00 b.85.4.1 79404 1rz3A 201 4.57e+00 c.37.1.6 -7048 1m6kA 251 4.96e+00 e.3.1.1 78695 1n9pA 207 5.61e+00 b.1.18.16 80343 1rypE 242 7.83e+00 1rypE d.153.1.4 41936 1utwA 432 9.16e+00 1uypA 432 9.17e+00 unknown_sccs -3480 unknown_sccs -4554 1qi9A 556 9.31e+00 1qhbA a.111.1.2 19053 1cqwA 295 9.33e+00 1b6g c.69.1.8 34679 1rybA 212 1.13e+01 c.56.3.1 -7858 1obbA 480 1.18e+01 c.2.1.5 86760 d.162.1.2 86761 1bteA 97 1.19e+01 1bteA g.7.1.3 44463 1bn7A 294 1.28e+01 1bn6A c.69.1.8 34677 1dkxA 219 1.29e+01 1dkzA unknown_sccs -446 unknown_sccs -3061 1o54A 277 1.29e+01 c.66.1.13 -8095 1s48A 609 1.44e+01 e.8.1.4 -11955 1dkzA 219 1.46e+01 1dkzA unknown_sccs -445 unknown_sccs -3060 1fzvA 132 1.83e+01 1vpfA g.17.1.1 60159 1aohA 147 1.89e+01 1aohA b.2.2.2 22401 1bt4A 362 2.17e+01 1bjnA c.67.1.4 34468 1hkhA 279 2.19e+01 c.69.1.12 -8342 1kmoA 774 2.30e+01 f.4.3.3 72753 1bn6A 294 2.33e+01 1bn6A c.69.1.8 34678 1dg3A 592 2.34e+01 1dg3A a.114.1.1 19078 c.37.1.8 32153 1soxA 466 2.44e+01 1soxA b.1.18.6 21947 d.120.1.1 41090 d.176.1.1 42563 1dw9A 156 2.53e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1rypF 233 2.57e+01 1rypF d.153.1.4 41937 1sfp 114 2.59e+01 1sfp b.23.1.1 23895 1dwkA 156 2.61e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1kqfB 294 2.62e+01 d.58.1.5 75900 f.23.22.1 75901 1po0A 751 2.63e+01 f.4.3.3 -12363 1hsbA 270 2.65e+01 1agdA b.1.1.2 20736 d.19.1.1 38257 1ju3A 583 2.74e+01 b.18.1.13 67300 c.69.1.21 67301 1iv8A 720 2.91e+01 b.71.1.1 76842 c.1.8.1 76843 1dgnA 89 2.91e+01 1dgnA a.77.1.3 18436 1pzdA 322 2.96e+01 unknown_sccs -2848 unknown_sccs -10778 1q5dA 419 3.08e+01 a.104.1.1 -1454 1jnrA 643 3.18e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1qd5A 275 3.23e+01 1qd5A f.4.2.1 43748 1ton 235 3.31e+01 5ptp b.47.1.2 26307 1iupA 282 3.33e+01 c.69.1.10 76815 1q38A 89 3.36e+01 b.1.2.1 -2765 1m5zA 91 3.39e+01 b.36.1.1 78676 1qwlA 505 3.41e+01 e.5.1.1 -11823 1g0uE 234 3.43e+01 d.153.1.4 41950 1flrL 219 3.43e+01 8fabA b.1.1.1 19904 b.1.1.2 20998 1kt8A 365 3.48e+01 e.17.1.1 77531 1cof 143 3.68e+01 1cof d.109.1.2 40860 1cfyA 143 3.72e+01 1cof d.109.1.2 40858 1aohB 147 3.73e+01 1aohA b.2.2.2 22402 1vi9A 299 3.86e+01 c.72.1.5 -8393 1r7aA 504 3.87e+01 b.71.1.1 -4664 c.1.8.1 -5283 1na3A 91 3.98e+01 k.38.1.1 85481