# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uc2A 481 9.05e-01 unknown_sccs -11725 1cqwA 295 1.50e+00 1b6g c.69.1.8 34679 1bn7A 294 1.70e+00 1bn6A c.69.1.8 34677 1bn6A 294 2.23e+00 1bn6A c.69.1.8 34678 1bt4A 362 2.54e+00 1bjnA c.67.1.4 34468 1jhnA 424 2.74e+00 b.29.1.12 70060 b.104.1.1 66722 1mq7A 154 4.01e+00 b.85.4.1 79404 1n9pA 207 4.36e+00 b.1.18.16 80343 1s48A 609 4.60e+00 e.8.1.4 -11955 1taq 832 5.23e+00 1taq a.60.7.1 18082 c.120.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1utwA 432 5.39e+00 1uypA 432 5.39e+00 unknown_sccs -3480 unknown_sccs -4554 1m42A 102 6.43e+00 b.1.18.17 78597 1m6kA 251 6.71e+00 e.3.1.1 78695 1dkxA 219 6.72e+00 1dkzA unknown_sccs -446 unknown_sccs -3061 1dkzA 219 7.58e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1sfp 114 8.31e+00 1sfp b.23.1.1 23895 1dr8B 344 9.22e+00 1cnzA c.77.1.1 35052 1g0uE 234 9.39e+00 d.153.1.4 41950 1dgnA 89 9.91e+00 1dgnA a.77.1.3 18436 1obbA 480 1.05e+01 c.2.1.5 86760 d.162.1.2 86761 1ju3A 583 1.07e+01 b.18.1.13 67300 c.69.1.21 67301 1hxn 219 1.08e+01 1hxn b.66.1.1 27529 1js3A 486 1.12e+01 c.67.1.6 67215 1c0pA 363 1.28e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1m5zA 91 1.29e+01 b.36.1.1 78676 2prd 174 1.32e+01 2prd b.40.5.1 25435 1rypF 233 1.37e+01 1rypF d.153.1.4 41937 1rybA 212 1.38e+01 c.56.3.1 -7858 1rypE 242 1.41e+01 1rypE d.153.1.4 41936 1s3iA 310 1.49e+01 b.46.1.1 -4111 c.65.1.1 -8042 1fwxA 595 1.50e+01 b.6.1.4 60069 b.69.3.1 60070 1dw9A 156 1.53e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1rz3A 201 1.53e+01 c.37.1.6 -7048 1pvtA 238 1.54e+01 c.74.1.1 -8444 1dwkA 156 1.59e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1ji2A 585 1.64e+01 b.1.18.2 71672 b.71.1.1 71673 c.1.8.1 71674 1o54A 277 1.81e+01 c.66.1.13 -8095 1h3gA 601 1.89e+01 b.1.18.2 -2725 b.71.1.1 -4653 c.1.8.1 -5277 1mr7A 209 1.91e+01 b.81.1.3 -4798 1vi9A 299 1.95e+01 c.72.1.5 -8393 1h6tA 291 2.02e+01 b.1.18.15 65686 c.10.2.1 65687 1kmoA 774 2.11e+01 f.4.3.3 72753 1bag 425 2.16e+01 1bag b.71.1.1 27720 c.1.8.1 28707 1ii6A 368 2.16e+01 1bg2 c.37.1.9 62413 1aohA 147 2.23e+01 1aohA b.2.2.2 22401 1cc1L 498 2.24e+01 1h2rL e.18.1.1 43301 1dg3A 592 2.26e+01 1dg3A a.114.1.1 19078 c.37.1.8 32153 1ipd 345 2.30e+01 1cnzA c.77.1.1 35038 1dghB 498 2.40e+01 1cf9A e.5.1.1 42791 7catA 506 2.41e+01 1cf9A e.5.1.1 42781 1kqfB 294 2.43e+01 d.58.1.5 75900 f.23.22.1 75901 1hkhA 279 2.47e+01 c.69.1.12 -8342 1po0A 751 2.50e+01 f.4.3.3 -12363 1f5nA 592 2.53e+01 1dg3A a.114.1.1 19077 c.37.1.8 32152 1dtyA 429 2.54e+01 1dtyA c.67.1.4 34495 1oe9A 795 2.67e+01 b.34.3.1 -3581 c.37.1.9 -7103 1qcoA 423 2.75e+01 1qcnA b.34.8.1 59021 d.177.1.1 59022 1fs7A 485 2.76e+01 1qdbA a.138.1.3 19691 1qcnA 421 2.76e+01 1qcnA b.34.8.1 59017 d.177.1.1 59018 1hyoA 421 2.79e+01 1qcnA b.34.8.1 59001 d.177.1.1 59002 1idm 343 2.85e+01 1cnzA c.77.1.1 35035 1jnrA 643 2.85e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1kk6A 209 2.89e+01 b.81.1.3 68657 1gweA 503 2.90e+01 e.5.1.1 70667 1flrL 219 2.94e+01 8fabA b.1.1.1 19904 b.1.1.2 20998 1hbzA 498 2.98e+01 1cf9A e.5.1.1 60937 1bvzA 585 3.03e+01 1bvzA b.1.18.2 21856 b.71.1.1 27783 c.1.8.1 28770 1d2nA 272 3.06e+01 1d2nA c.37.1.20 32428 1hn0A 1021 3.17e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1smd 496 3.18e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1ylvA 342 3.20e+01 1b4kA c.1.10.3 29180 1dgfA 497 3.23e+01 1cf9A e.5.1.1 42782 1nvpD 108 3.26e+01 a.32.1.1 -782 b.56.1.1 -4386 1h7nA 342 3.30e+01 1b4kA c.1.10.3 60726 2pcfB 250 3.31e+01 1hcz i.4.1.1 45911 1qwlA 505 3.35e+01 e.5.1.1 -11823 1bix 287 3.40e+01 1bix d.151.1.1 41781 1hjdA 101 3.43e+01 b.34.2.1 65846 1ohlA 342 3.47e+01 c.1.10.3 87035 1hsbA 270 3.49e+01 1agdA b.1.1.2 20736 d.19.1.1 38257 1aohB 147 3.51e+01 1aohA b.2.2.2 22402 1nsf 273 3.52e+01 1d2nA c.37.1.20 32429 1yge 839 3.62e+01 1yge a.119.1.1 19234 b.12.1.1 23634 1gwyA 175 3.65e+01 b.97.1.1 83356 1qi9A 556 3.68e+01 1qhbA a.111.1.2 19053 1cof 143 3.73e+01 1cof d.109.1.2 40860 1cfyA 143 3.75e+01 1cof d.109.1.2 40858 1p9aG 290 3.78e+01 c.10.2.7 87990 1q5dA 419 3.82e+01 a.104.1.1 -1454 1qdbA 473 3.82e+01 1qdbA a.138.1.3 19688 1c76A 136 3.99e+01 2sak d.15.5.1 37718