# List of top-scoring protein chains for T0209.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b87A 181 2.03e-01 1b87A d.108.1.1 40797 1n71A 180 2.05e-01 d.108.1.1 85370 1kgiA 127 9.22e-01 b.3.4.1 77388 1cmlA 389 1.75e+00 1bi5A c.95.1.2 35989 c.95.1.2 35990 1jwxA 389 1.75e+00 c.95.1.2 71920 c.95.1.2 71921 1bq6A 388 1.76e+00 1bi5A c.95.1.2 35987 c.95.1.2 35988 1bi5A 389 1.76e+00 1bi5A c.95.1.2 35985 c.95.1.2 35986 1chwA 389 1.76e+00 1bi5A c.95.1.2 35997 c.95.1.2 35998 1i86A 389 1.76e+00 c.95.1.2 66068 c.95.1.2 66069 1i89A 389 1.79e+00 c.95.1.2 66074 c.95.1.2 66075 1i88A 389 1.80e+00 c.95.1.2 66070 c.95.1.2 66071 1i8bA 389 1.81e+00 c.95.1.2 66078 c.95.1.2 66079 1dvzA 124 1.86e+00 1etb1 b.3.4.1 22567 2pabA 127 1.86e+00 1etb1 b.3.4.1 22597 1gkeA 120 1.99e+00 1etb1 b.3.4.1 22619 1tshA 127 1.99e+00 1etb1 b.3.4.1 22549 1d6iA 388 2.02e+00 1bi5A c.95.1.2 36001 c.95.1.2 36002 2trhA 127 2.04e+00 1etb1 b.3.4.1 22587 1gkoA 127 2.10e+00 b.3.4.1 65252 1ttbA 127 2.11e+00 1etb1 b.3.4.1 22543 1iikA 127 2.13e+00 b.3.4.1 76746 1f41A 127 2.14e+00 1etb1 b.3.4.1 22539 1ttrA 127 2.14e+00 1etb1 b.3.4.1 22555 1fhnA 127 2.14e+00 1etb1 b.3.4.1 59842 1bz8A 126 2.15e+00 1etb1 b.3.4.1 22591 1bzdA 127 2.16e+00 1etb1 b.3.4.1 22575 1ttcA 127 2.32e+00 1etb1 b.3.4.1 22551 2tryA 127 2.46e+00 1etb1 b.3.4.1 22595 1j79A 347 2.73e+00 1j79A c.1.9.4 62675 1ijnA 127 2.86e+00 b.3.4.1 83691 1d6hA 387 3.23e+00 1bi5A c.95.1.2 36005 c.95.1.2 36006 5ttrA 127 3.46e+00 1etb1 b.3.4.1 22603 1f7dA 136 3.47e+00 1dun b.85.4.1 28353 1nz2A 153 3.65e+00 a.1.1.2 86437 1r2zA 274 3.75e+00 1l1zA 274 3.77e+00 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1o6xA 81 3.93e+00 d.58.3.1 81105 1g1oA 127 4.14e+00 b.3.4.1 65080 1jtiA 385 4.29e+00 e.1.1.1 63280 1ovaA 386 4.29e+00 1ovaA e.1.1.1 42619 1nz3A 153 4.52e+00 a.1.1.2 86438 1pdgA 109 5.23e+00 1pdgA g.17.1.1 44748 1obaA 339 5.35e+00 1h09A 338 5.41e+00 b.109.1.1 83420 c.1.8.8 83421 1udxA 416 5.86e+00 1qvbA 481 6.30e+00 1qvbA c.1.8.4 28983 1o7tA 309 6.98e+00 c.94.1.1 86645 1d9yA 309 7.22e+00 1mrp c.94.1.1 35798 1rz3A 201 7.22e+00 1gjnA 153 7.23e+00 a.1.1.2 70191 1r1nA 309 7.25e+00 1rse 153 7.45e+00 1a6m a.1.1.2 15196 1qabB 118 7.69e+00 1etb1 b.3.4.1 22616 1uhgA 382 8.40e+00 e.1.1.1 88491 1xch 153 8.53e+00 1a6m a.1.1.2 15194 1f86A 115 8.91e+00 1etb1 b.3.4.1 59689 1k28D 391 9.15e+00 b.106.1.1 68052 b.106.1.1 68053 1shsA 147 9.41e+00 1shsA b.15.1.1 23675 1bje 153 9.57e+00 1a6m a.1.1.2 15197 1ddgA 374 9.95e+00 1amoA b.43.4.1 25671 c.25.1.4 31559 1as4A 341 1.01e+01 1sek e.1.1.1 42623 1hrm 153 1.02e+01 1a6m a.1.1.2 15193 1myiA 153 1.03e+01 1a6m a.1.1.2 15175 1mr7A 209 1.03e+01 1qwlA 505 1.06e+01 1mbs 153 1.06e+01 1a6m a.1.1.2 15156 3caaA 341 1.07e+01 1c8oA e.1.1.1 42625 4caaA 341 1.09e+01 1sek e.1.1.1 42627 2achA 360 1.16e+01 1c8oA e.1.1.1 42626 1o8bA 219 1.16e+01 c.35.1.2 81180 d.58.40.1 81181 1mwcA 153 1.18e+01 1a6m a.1.1.2 15157 1do1A 154 1.18e+01 1a6m a.1.1.2 15049 1mnh 153 1.19e+01 1a6m a.1.1.2 15187 1qmnA 401 1.20e+01 1ovaA e.1.1.1 42624 2mm1 153 1.20e+01 1a6m a.1.1.2 15203 1pv8A 330 1.23e+01 1nr9A 223 1.24e+01 d.177.1.1 86119 1yma 153 1.24e+01 1a6m a.1.1.2 15202 1e51A 330 1.24e+01 1b4kA c.1.10.3 59254 1myjA 153 1.25e+01 1a6m a.1.1.2 15171 1mnjA 153 1.28e+01 1a6m a.1.1.2 15179 1j0sA 157 1.29e+01 1gu6A 452 1.31e+01 a.138.1.3 70575 1mniA 153 1.32e+01 1a6m a.1.1.2 15173 1mnkA 153 1.36e+01 1a6m a.1.1.2 15181 1m6mA 153 1.39e+01 1a6m a.1.1.2 15163 1gzgA 337 1.42e+01 c.1.10.3 70805 1b4kA 337 1.45e+01 1b4kA c.1.10.3 29184 1lnlA 408 1.45e+01 a.86.1.1 84635 b.112.1.1 84636 1iuhA 198 1.55e+01 d.61.1.2 83711 1myhA 153 1.56e+01 1a6m a.1.1.2 15177 2spo 154 1.59e+01 1a6m a.1.1.2 15053 1i1gA 141 1.61e+01 a.4.5.32 65982 d.58.4.2 65983 1ch5A 154 1.65e+01 1a6m a.1.1.2 15127 1pnuB 205 1.68e+01 i.1.1.1 88199 1nkwB 211 1.70e+01 i.1.1.2 80587 1q0xH 221 1.81e+01 1q0yH 221 1.81e+01 1mcy 154 1.82e+01 1a6m a.1.1.2 15076 1obm 154 1.85e+01 1a6m a.1.1.2 15091 2spl 154 1.85e+01 1a6m a.1.1.2 15047 1qrzA 246 1.98e+01 5ptp b.47.1.2 26366 1nazA 154 2.00e+01 a.1.1.2 85505 1emy 153 2.02e+01 1a6m a.1.1.2 15204 1ihkA 174 2.03e+01 1bfg b.42.1.1 62384 1qauA 112 2.03e+01 1qauA b.36.1.1 24779 1l3wA 546 2.04e+01 b.1.6.1 73553 b.1.6.1 73554 b.1.6.1 73555 b.1.6.1 73556 b.1.6.1 73557 1ch1A 154 2.04e+01 1a6m a.1.1.2 15094 1fcs 154 2.05e+01 1a6m a.1.1.2 15055 1j3fA 154 2.09e+01 2mgj 154 2.10e+01 1a6m a.1.1.2 15119 1mowA 260 2.13e+01 d.95.2.1 79360 d.95.2.1 79361 1qavB 115 2.14e+01 1qauA b.36.1.1 24780 1cp0A 154 2.15e+01 1a6m a.1.1.2 15109 1mod 154 2.16e+01 1a6m a.1.1.2 15107 1p6gS 91 2.17e+01 i.1.1.1 87837 1ch7A 154 2.17e+01 1a6m a.1.1.2 15083 1h1xA 154 2.18e+01 1co8A 154 2.18e+01 1a6m a.1.1.2 15079 2mgg 154 2.19e+01 1a6m a.1.1.2 15069 1cikA 154 2.20e+01 1a6m a.1.1.2 15039 1cpwA 154 2.20e+01 1a6m a.1.1.2 15136 1mlg 154 2.21e+01 1a6m a.1.1.2 15104 1ch2A 154 2.25e+01 1a6m a.1.1.2 15064 1co9A 154 2.26e+01 1a6m a.1.1.2 15028 1a6g 151 2.27e+01 1a6m a.1.1.2 15021 1cp5A 154 2.27e+01 1a6m a.1.1.2 15123 1g0uD 241 2.28e+01 d.153.1.4 41949 1cioA 154 2.29e+01 1a6m a.1.1.2 15029 1jw8A 154 2.31e+01 a.1.1.2 67376 1uirA 314 2.31e+01 1a6m 151 2.32e+01 1a6m a.1.1.2 15018 1mgn 154 2.34e+01 1a6m a.1.1.2 15097 1mll 154 2.34e+01 1a6m a.1.1.2 15057 1ch3A 154 2.35e+01 1a6m a.1.1.2 15111 1bzpA 153 2.35e+01 1a6m a.1.1.2 15020 1ch9A 154 2.37e+01 1a6m a.1.1.2 15062 1ufpA 154 2.37e+01 2mgb 154 2.39e+01 1a6m a.1.1.2 15102 1duoA 153 2.41e+01 1a6m a.1.1.2 15137 1b64 91 2.43e+01 1b64 d.58.12.1 39306 1irc 154 2.43e+01 1a6m a.1.1.2 15141 1ozhA 566 2.44e+01 1mlu 154 2.45e+01 1a6m a.1.1.2 15093 1b8qA 127 2.46e+01 1qauA b.36.1.1 24781 1rypE 242 2.48e+01 1rypE d.153.1.4 41936 1mls 154 2.48e+01 1a6m a.1.1.2 15058 2mge 154 2.49e+01 1a6m a.1.1.2 15056 1lueA 154 2.51e+01 1n3fA 163 2.51e+01 d.95.2.1 85299 1g9zA 152 2.52e+01 1bp7A d.95.2.1 60408 102m 154 2.53e+01 1a6m a.1.1.2 15073 1h1yA 228 2.53e+01 c.1.2.2 76506 1mlo 154 2.55e+01 1a6m a.1.1.2 15085 1qkzH 219 2.56e+01 1igtB b.1.1.1 20137 b.1.1.2 21167 1rsoA 60 2.62e+01 1fntE 260 2.64e+01 1l0lI 78 2.72e+01 d.184.1.3 84495 1qcrI 28 2.81e+01 1dtiA 154 2.88e+01 1a6m a.1.1.2 15074 1iwmA 186 2.93e+01 b.125.1.2 83758 1alq 266 3.02e+01 1btl e.3.1.1 42707 1r0pA 312 3.03e+01 1o16A 154 3.06e+01 1udkA 51 3.20e+01 1a4fB 146 3.22e+01 1abwA a.1.1.2 15573 1rypB 250 3.23e+01 1rypB d.153.1.4 41933 1fawB 146 3.26e+01 a.1.1.2 65003 1dutA 133 3.26e+01 1dun b.85.4.1 28355 1guzA 310 3.27e+01 c.2.1.5 65586 d.162.1.1 65587 1gv1A 310 3.32e+01 c.2.1.5 65598 d.162.1.1 65599 1tfpA 130 3.36e+01 1etb1 b.3.4.1 22623 1iv9A 96 3.36e+01 1ge9A 184 3.60e+01 1dd5A d.67.3.1 60463 1d5yA 292 3.65e+01 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 1be9A 119 3.70e+01 1pdr b.36.1.1 24774 1bkjA 240 3.74e+01 1bkjA d.90.1.1 40243 1rkqA 282 3.82e+01 1nf3C 128 3.85e+01 b.36.1.1 85596 1lx5B 102 3.97e+01 g.7.1.3 84733 1ej0A 180 3.97e+01 1ej0A c.66.1.2 34179