# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jhnA	424	1.24e+00		b.29.1.12	70060
				b.104.1.1	66722
1esmA	316	2.65e+00	1esmA	c.37.1.6	31953
1uc2A	481	5.62e+00			
1ac5	483	5.97e+00	1ac5	c.69.1.5	34653
1iwmA	186	7.15e+00		b.125.1.2	83758
1hxn	219	7.18e+00	1hxn	b.66.1.1	27529
1dkzA	219	7.27e+00	1dkzA	e.20.1.1	43314
1q8iA	783	7.76e+00			
1of4A	179	7.82e+00		b.18.1.18	86932
1n9pA	207	8.01e+00		b.1.18.16	80343
1oh4A	179	9.04e+00			
1bteA	97	9.72e+00	1bteA	g.7.1.3	44463
1am2	199	1.02e+01	1am2	b.86.1.2	28381
1vjlA	164	1.05e+01			
1rz3A	201	1.08e+01			
1i1jA	108	1.15e+01	1i1jA	b.34.2.1	61531
1fzvA	132	1.78e+01	1vpfA	g.17.1.1	60159
1lr0A	129	1.91e+01		d.212.1.1	74213
1bftA	101	2.26e+01	1a3qA	b.1.18.1	21934
1qd6C	240	2.80e+01	1qd5A		
1kzfA	230	2.94e+01		d.108.1.3	73354
1r8nA	185	3.10e+01			
1dgwA	178	3.43e+01	1dgwA	b.82.1.2	28090
1iazA	179	3.44e+01	1iazA	b.97.1.1	62131
1div	149	3.57e+01	1div	d.99.1.1	40692
				d.100.1.1	40693
1rypE	242	3.85e+01	1rypE	d.153.1.4	41936