# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1aohA 147 8.51e-01 1aohA b.2.2.2 22401 1rypF 233 1.62e+00 1rypF d.153.1.4 41937 1bob 320 2.32e+00 1bob d.108.1.1 40816 1s5dA 240 2.51e+00 1hxn 219 2.81e+00 1hxn b.66.1.1 27529 1v7rA 186 2.88e+00 1dv1A 449 4.09e+00 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 2prd 174 4.15e+00 2prd b.40.5.1 25435 1cx4A 305 4.42e+00 b.82.3.2 59099 b.82.3.2 59100 1qs1A 462 4.66e+00 1qs1A d.166.1.1 42260 d.166.1.1 42261 1msk 331 5.41e+00 1msk d.173.1.1 42495 1rz1A 161 5.48e+00 1j05B 121 5.88e+00 1giqA 413 5.94e+00 d.166.1.1 76224 d.166.1.1 76225 1b78A 193 6.35e+00 1b78A c.51.4.1 33221 1dykA 394 6.46e+00 1dykA b.29.1.4 24223 b.29.1.4 24224 1cb0A 283 6.54e+00 1cb0A c.56.2.1 33790 1jeyB 565 6.68e+00 1jeqB e.31.1.2 62925 1qy5A 269 6.77e+00 1esmA 316 6.97e+00 1esmA c.37.1.6 31953 1v04A 355 7.16e+00 1q38A 89 7.58e+00 1h6zA 913 8.28e+00 c.1.12.2 70906 c.8.1.1 70907 d.142.1.5 70908 2madH 373 8.83e+00 2bbkH b.69.2.1 27639 1vybA 238 9.06e+00 1eudB 396 9.07e+00 2scuB c.23.4.1 31150 d.142.1.4 41571 1qwlA 505 9.26e+00 1jhnA 424 9.62e+00 b.29.1.12 70060 b.104.1.1 66722 1hw5A 210 9.92e+00 2cgpA a.4.5.4 16098 b.82.3.2 28137 1cqxA 403 1.03e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1oz2A 331 1.05e+01 1fzvA 132 1.08e+01 1vpfA g.17.1.1 60159 1lr0A 129 1.11e+01 d.212.1.1 74213 1qauA 112 1.19e+01 1qauA b.36.1.1 24779 1i6iA 366 1.25e+01 1bg2 c.37.1.9 61844 1cxyA 90 1.25e+01 1cyo d.120.1.1 41085 1oi1A 221 1.28e+01 b.34.9.3 87037 b.34.9.3 87038 1bteA 97 1.28e+01 1bteA g.7.1.3 44463 1nnvA 110 1.41e+01 1d2sA 170 1.44e+01 1d2sA b.29.1.4 24221 1rypJ 204 1.46e+01 d.153.1.4 41878 1iz6A 138 1.49e+01 b.34.5.2 76976 b.40.4.5 76977 1j57A 143 1.50e+01 d.221.1.1 77079 1omiA 248 1.52e+01 a.4.5.4 87079 b.82.3.3 87080 1hfuA 503 1.53e+01 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1rz3A 201 1.61e+01 1l1oC 181 1.65e+01 b.40.4.3 73480 1ii2A 524 1.67e+01 c.91.1.1 66146 c.109.1.1 66147 1bkb 136 1.69e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1lkfA 299 1.71e+01 1pvl f.6.1.1 43821 1bn7A 294 1.80e+01 1bn6A c.69.1.8 34677 1mvuB 121 1.87e+01 1i8dA 213 2.00e+01 b.43.4.3 61953 b.43.4.3 61954 1b1cA 181 2.04e+01 1amoA c.23.5.2 31212 1j3bA 529 2.04e+01 c.91.1.1 77071 c.109.1.1 77072 1kjqA 391 2.12e+01 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1dgwA 178 2.13e+01 1dgwA b.82.1.2 28090 1eyzA 392 2.16e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1ixmA 192 2.23e+01 1ixmA d.123.1.1 41114 1s3iA 310 2.23e+01 1a65A 504 2.31e+01 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1r64A 481 2.32e+01 1rypE 242 2.32e+01 1rypE d.153.1.4 41936 1ouwA 152 2.35e+01 1d09B 153 2.38e+01 8atcB d.58.2.1 39015 g.41.7.1 45267 1cot 129 2.41e+01 1ycc a.3.1.1 15899 1bx4A 345 2.46e+01 1bx4A c.72.1.1 34935 1n3jA 119 2.56e+01 b.85.7.2 79963 1eajA 126 2.62e+01 1f5wA b.1.1.1 59401 2nlrA 234 2.67e+01 2nlrA b.29.1.11 24344 1a9xA 1058 2.88e+01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1f5fA 205 2.89e+01 1d2sA b.29.1.4 24222 1iooA 196 2.89e+01 d.124.1.1 71250 1o54A 277 2.91e+01 1rss 151 3.01e+01 1rss a.75.1.1 18392 1in4A 334 3.04e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1upaA 573 3.04e+01 1cojA 212 3.04e+01 1avmA a.2.11.1 15737 d.44.1.1 38734 1vhxA 150 3.06e+01 1p9eA 331 3.14e+01 1in6A 334 3.19e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1ihkA 174 3.24e+01 1bfg b.42.1.1 62384 1hyoA 421 3.31e+01 1qcnA b.34.8.1 59001 d.177.1.1 59002 1i40A 175 3.38e+01 b.40.5.1 66024 1rypL 212 3.43e+01 d.153.1.4 41880 1ewnA 219 3.44e+01 1bnkA b.46.1.2 25762 1m93B 245 3.44e+01 1auvA 311 3.45e+01 1auvA c.30.1.5 31723 d.142.1.3 41558 1i1jA 108 3.52e+01 1i1jA b.34.2.1 61531 1fiqC 763 3.57e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1klfB 279 3.59e+01 b.2.3.2 72684 b.2.3.2 72685 1sfp 114 3.66e+01 1sfp b.23.1.1 23895 1e6wA 260 3.69e+01 1e6wA c.2.1.2 59326 1jmxB 349 3.73e+01 b.69.2.2 66906 1dynA 125 3.79e+01 1dynA b.55.1.1 26955 1gsa 316 3.79e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1iz0A 302 3.80e+01 b.35.1.2 83821 c.2.1.1 83822 1dgfA 497 3.81e+01 1cf9A e.5.1.1 42782 1m0wA 491 3.85e+01 c.30.1.4 78363 d.142.1.6 78364 1bsg 266 3.96e+01 1btl e.3.1.1 42729 1kblA 873 3.99e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386