# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jhnA	424	1.20e+00		b.29.1.12	70060
				b.104.1.1	66722
1rypJ	204	4.13e+00		d.153.1.4	41878
1rypF	233	5.82e+00	1rypF	d.153.1.4	41937
1iwmA	186	6.24e+00		b.125.1.2	83758
1q8iA	783	6.74e+00			
1rz3A	201	8.06e+00			
1fzvA	132	1.04e+01	1vpfA	g.17.1.1	60159
1dkzA	219	1.11e+01	1dkzA	e.20.1.1	43314
1m6kA	251	1.15e+01		e.3.1.1	78695
1j1bA	420	1.34e+01			
1uc2A	481	1.68e+01			
1qauA	112	1.78e+01	1qauA	b.36.1.1	24779
1rypE	242	1.85e+01	1rypE	d.153.1.4	41936
1bteA	97	1.87e+01	1bteA	g.7.1.3	44463
1iazA	179	1.98e+01	1iazA	b.97.1.1	62131
1f8eA	388	2.05e+01	2qwc	b.68.1.1	59694
1hxn	219	2.07e+01	1hxn	b.66.1.1	27529
1qd6C	240	2.09e+01	1qd5A		
1aohA	147	2.09e+01	1aohA	b.2.2.2	22401
1sacA	204	2.14e+01	1sacA	b.29.1.5	24237
1n9pA	207	2.14e+01		b.1.18.16	80343
1cojA	212	2.30e+01	1avmA	a.2.11.1	15737
				d.44.1.1	38734
1oz2A	331	2.37e+01			
1k5dB	201	2.48e+01		b.55.1.3	68169
1dgwA	178	2.50e+01	1dgwA	b.82.1.2	28090
1dgwX	79	2.63e+01	1caxB	b.82.1.2	28091
1v7rA	186	2.81e+01			
1v04A	355	2.83e+01			
1j57A	143	3.09e+01		d.221.1.1	77079
1gzwA	134	3.16e+01			
1esmA	316	3.27e+01	1esmA	c.37.1.6	31953
1vjlA	164	3.41e+01			
1vybA	238	3.51e+01			
1iz0A	302	3.87e+01		b.35.1.2	83821
				c.2.1.1	83822
1a9xA	1058	3.95e+01		a.92.1.1	18550
				c.24.1.1	31479
				c.30.1.1	31657
				c.30.1.1	31658
				d.142.1.2	41502
				d.142.1.2	41503
1ppo	216	3.95e+01	1cs8A	d.3.1.1	37020