# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1hxn	219	2.81e-01	1hxn	b.66.1.1	27529
1dkzA	219	6.91e-01	1dkzA	e.20.1.1	43314
1iwmA	186	2.43e+00		b.125.1.2	83758
1vjlA	164	4.19e+00			
1q8iA	783	4.51e+00			
1j1bA	420	4.59e+00			
1iazA	179	4.82e+00	1iazA	b.97.1.1	62131
1esmA	316	5.66e+00	1esmA	c.37.1.6	31953
1jhnA	424	7.84e+00		b.29.1.12	70060
				b.104.1.1	66722
1n9pA	207	9.54e+00		b.1.18.16	80343
1uc2A	481	9.99e+00			
1rypF	233	1.18e+01	1rypF	d.153.1.4	41937
1dgwX	79	1.33e+01	1caxB	b.82.1.2	28091
1qd6C	240	1.36e+01	1qd5A		
1rypJ	204	1.38e+01		d.153.1.4	41878
1v04A	355	1.40e+01			
1cojA	212	1.52e+01	1avmA	a.2.11.1	15737
				d.44.1.1	38734
1cb0A	283	1.57e+01	1cb0A	c.56.2.1	33790
1s5dA	240	1.68e+01			
1jeyB	565	1.83e+01	1jeqB	e.31.1.2	62925
1bn7A	294	1.97e+01	1bn6A	c.69.1.8	34677
1s3iA	310	2.03e+01			
1oo2A	119	2.11e+01			
1qs1A	462	2.23e+01	1qs1A	d.166.1.1	42260
				d.166.1.1	42261
1dwkA	156	2.38e+01	1dw9A	a.35.1.4	17075
				d.72.1.1	39606
1gzwA	134	2.42e+01			
1div	149	2.61e+01	1div	d.99.1.1	40692
				d.100.1.1	40693
1rz3A	201	2.62e+01			
2prd	174	2.69e+01	2prd	b.40.5.1	25435
1a34A	159	2.69e+01	1a34A	b.121.7.1	23286
1in4A	334	2.71e+01	1hqcA	a.4.5.11	62597
				c.37.1.20	62598
1of4A	179	2.80e+01		b.18.1.18	86932
1hfuA	503	2.83e+01		b.6.1.3	65827
				b.6.1.3	65828
				b.6.1.3	65829
1rypE	242	3.01e+01	1rypE	d.153.1.4	41936
1oz2A	331	3.03e+01			
1iz0A	302	3.08e+01		b.35.1.2	83821
				c.2.1.1	83822
1in6A	334	3.31e+01	1hqcA	a.4.5.11	62601
				c.37.1.20	62602
1sacA	204	3.33e+01	1sacA	b.29.1.5	24237
1oh4A	179	3.48e+01			
1r7aA	504	3.55e+01			
1p5sA	203	3.62e+01			
1b4kA	337	3.68e+01	1b4kA	c.1.10.3	29184
1dgwA	178	3.94e+01	1dgwA	b.82.1.2	28090