# List of top-scoring protein chains for t04-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz3A 201 1.81e-01 1ovaA 386 2.15e-01 1ovaA e.1.1.1 42619 1mexL 213 6.84e-01 1qauA 112 7.47e-01 1qauA b.36.1.1 24779 1dxgA 36 8.22e-01 1dxgA g.41.5.2 45247 1uhgA 385 9.63e-01 e.1.1.1 88491 1cx4A 305 1.07e+00 b.82.3.2 59099 b.82.3.2 59100 1rurL 217 1.13e+00 1mr7A 209 1.42e+00 1k32A 1045 1.44e+00 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1ospL 214 1.52e+00 32c2A b.1.1.1 20116 b.1.1.2 21146 1mlbA 214 1.85e+00 8fabA b.1.1.1 20050 b.1.1.2 21092 1ia9A 280 1.91e+00 1ia9A d.144.1.5 62113 1aohA 147 2.07e+00 1aohA b.2.2.2 22401 1q9rA 219 2.14e+00 1e6oL 212 2.16e+00 32c2A b.1.1.1 20494 b.1.1.2 21452 1t2dA 322 2.19e+00 1forL 210 2.21e+00 8fabA b.1.1.1 19988 b.1.1.2 21044 1tetL 216 2.27e+00 32c2A b.1.1.1 19902 b.1.1.2 20996 1in4A 334 2.46e+00 1hqcA a.4.5.11 62597 c.37.1.20 62598 1ldg 316 2.84e+00 1ceqA c.2.1.5 30165 d.162.1.1 42132 1mjuL 219 2.86e+00 1kwsA 261 3.08e+00 c.68.1.7 73083 2fbjL 213 3.11e+00 8fabA b.1.1.1 19850 b.1.1.2 20954 3rabA 169 3.19e+00 1ctqA c.37.1.8 32018 1rss 151 3.65e+00 1rss a.75.1.1 18392 1i8dA 213 3.71e+00 b.43.4.3 61953 b.43.4.3 61954 1in6A 334 3.78e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 1ayoA 130 3.94e+00 1ayoA b.2.4.1 22431 1eca 136 4.32e+00 1flp a.1.1.2 15209 1iz6A 138 4.36e+00 b.34.5.2 76976 b.40.4.5 76977 1ncwL 219 4.40e+00 b.1.1.1 85557 b.1.1.2 85558 1dgwA 178 4.66e+00 1dgwA b.82.1.2 28090 1opy 131 4.85e+00 1opy d.17.4.3 38113 1k1xA 659 5.36e+00 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1dbqA 289 5.61e+00 1qpzA c.93.1.1 35666 1ewnA 219 5.85e+00 1bnkA b.46.1.2 25762 1jhnA 424 6.14e+00 b.29.1.12 70060 b.104.1.1 66722 1oz2A 331 6.16e+00 1esmA 316 6.53e+00 1esmA c.37.1.6 31953 1b1cA 181 6.91e+00 1amoA c.23.5.2 31212 1dmmA 131 7.88e+00 1opy d.17.4.3 38114 1o8bA 219 8.00e+00 c.35.1.2 81180 d.58.40.1 81181 1hxn 219 8.03e+00 1hxn b.66.1.1 27529 1or7A 194 8.66e+00 a.4.13.2 87332 a.177.1.1 87333 2cpgA 45 8.99e+00 2cpgA a.43.1.2 17455 1pytA 94 9.38e+00 1pytA d.58.3.1 39064 1j3bA 529 9.85e+00 c.91.1.1 77071 c.109.1.1 77072 1pcfA 66 1.03e+01 1pcfA d.18.1.1 38142 1upaA 573 1.07e+01 1p9eA 331 1.09e+01 1f86A 115 1.11e+01 1etb1 b.3.4.1 59689 1udxA 416 1.14e+01 1lc5A 364 1.15e+01 c.67.1.1 73827 1a9xA 1058 1.16e+01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1iz0A 302 1.16e+01 b.35.1.2 83821 c.2.1.1 83822 1nd4A 264 1.19e+01 1ixmA 192 1.22e+01 1ixmA d.123.1.1 41114 1q38A 89 1.22e+01 1m2xA 223 1.23e+01 d.157.1.1 84764 1gzgA 337 1.24e+01 c.1.10.3 70805 1bteA 97 1.31e+01 1bteA g.7.1.3 44463 1qo7A 394 1.32e+01 1qo7A c.69.1.11 34697 1cf9A 753 1.33e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1bftA 101 1.33e+01 1a3qA b.1.18.1 21934 1r48A 35 1.37e+01 1vjnA 220 1.38e+01 1gmyA 261 1.39e+01 d.3.1.1 76236 1k7jA 206 1.39e+01 d.115.1.1 72103 1s5dA 240 1.41e+01 1snzA 344 1.43e+01 1budA 197 1.44e+01 1atlA d.92.1.9 40328 2eifA 136 1.47e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1p80A 753 1.47e+01 1nkiA 135 1.57e+01 1j1bA 420 1.62e+01 1rypF 233 1.65e+01 1rypF d.153.1.4 41937 1kc6A 257 1.70e+01 c.52.1.19 68419 1f3z 161 1.79e+01 1gpr b.84.3.1 28273 1rypE 242 1.88e+01 1rypE d.153.1.4 41936 1my7A 114 1.88e+01 b.1.18.1 79675 1b4kA 337 1.92e+01 1b4kA c.1.10.3 29184 1c2aA 120 1.92e+01 1c2aA g.3.13.1 44349 g.3.13.1 44350 1k5dB 201 1.93e+01 b.55.1.3 68169 1p5sA 203 2.01e+01 1pda 315 2.15e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1j57A 143 2.18e+01 d.221.1.1 77079 1o0pA 104 2.21e+01 d.58.7.1 86535 1nb5I 98 2.22e+01 d.17.1.2 80381 1f5aA 513 2.25e+01 1fa0B a.160.1.1 75835 d.218.1.3 75836 d.58.16.1 39337 1gjnA 153 2.29e+01 a.1.1.2 70191 1p5vA 235 2.32e+01 b.1.11.1 87812 b.7.2.1 87813 1a65A 504 2.33e+01 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1nhcA 336 2.33e+01 1uzpA 162 2.33e+01 1b6rA 355 2.37e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1nt2B 258 2.38e+01 a.183.1.1 86150 1ukkA 142 2.41e+01 1mvfD 82 2.43e+01 b.129.1.1 85143 1jmtA 104 2.47e+01 d.58.7.3 63180 1dwtA 153 2.48e+01 1a6m a.1.1.2 15190 1lqpA 135 2.50e+01 d.32.1.2 78151 1guiA 155 2.51e+01 b.18.1.14 76351 1ctqA 166 2.52e+01 1ctqA c.37.1.8 31965 1neu 124 2.59e+01 1neu b.1.1.1 19704 1qy5A 269 2.62e+01 1dkzA 219 2.64e+01 1dkzA e.20.1.1 43314 1dzfA 215 2.65e+01 1dzfA c.52.3.1 33344 d.78.1.1 39753 1fr2B 134 2.68e+01 d.4.1.1 83257 1olrA 224 2.74e+01 1vk9A 151 2.79e+01 1je5A 206 2.85e+01 1je5A b.40.4.7 62909 1rypK 198 2.85e+01 d.153.1.4 41879 1na3A 91 2.87e+01 k.38.1.1 85481 1ssxA 198 2.88e+01 1rhfA 182 2.89e+01 1owfB 94 2.91e+01 a.55.1.1 87488 1okrA 123 3.01e+01 1kjqA 391 3.02e+01 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1kao 167 3.08e+01 1ctqA c.37.1.8 32014 1uvqB 198 3.11e+01 1qq4A 198 3.16e+01 1qq4A b.47.1.1 25768 1vkdA 338 3.17e+01 2napA 723 3.18e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1gg3A 279 3.19e+01 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1f8fA 371 3.19e+01 b.35.1.2 83246 c.2.1.1 83247 1theA 260 3.23e+01 1theB d.3.1.1 37056 1cqxA 403 3.33e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1ffyA 917 3.38e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1nigA 152 3.41e+01 a.25.2.1 85740 1mwyA 73 3.41e+01 d.58.17.1 79616 1d2sA 170 3.42e+01 1d2sA b.29.1.4 24221 1nnsA 326 3.43e+01 c.88.1.1 85910 1nvpD 108 3.46e+01 1eyzA 392 3.49e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1fzvA 132 3.53e+01 1vpfA g.17.1.1 60159 1bouA 139 3.60e+01 1bouA a.88.1.1 18521 1qusA 322 3.66e+01 1ltm d.2.1.6 36991 1m2rA 327 3.66e+01 d.144.1.7 84760 1rz1A 161 3.68e+01 1aihA 170 3.69e+01 1aihA d.163.1.1 42149 1bjt 793 3.72e+01 1bjt e.11.1.1 43249 1m55A 197 3.74e+01 d.89.1.3 74469 1c0pA 363 3.74e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1fsgA 233 3.74e+01 1qk3A c.61.1.1 34029 1f8vA 355 3.80e+01 2bbvA b.121.4.4 23329 1qvbA 481 3.84e+01 1qvbA c.1.8.4 28983 1seiA 130 3.84e+01 1seiA d.140.1.1 41463 1iw7C 1119 3.94e+01 e.29.1.1 71474 1j7lA 264 3.98e+01 d.144.1.6 62697