# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1im8A	244	2.02e+00		c.66.1.14	66212
1nm8A	616	2.58e+00		c.43.1.3	85872
				c.43.1.3	85873
1v6sA	390	3.23e+00			
1umdA	367	3.69e+00			
1fvzA	271	3.87e+00	1fvzA	d.129.3.4	60050
1q0eA	152	3.88e+00			
1cbjA	151	4.34e+00	1mfmA	b.1.8.1	22213
1f75A	249	6.05e+00	1f75A	c.101.1.1	59662
1v1rA	400	6.64e+00			
1kqfB	294	6.77e+00		d.58.1.5	75900
				f.23.22.1	75901
1xsoA	150	8.91e+00	1mfmA	b.1.8.1	22273
1nkpB	83	9.42e+00		a.38.1.1	80574
1lqpA	135	1.01e+01		d.32.1.2	78151
1n71A	180	1.05e+01		d.108.1.1	85370
1nkiA	135	1.17e+01			
1l2uA	245	1.23e+01		c.1.2.3	73516
1m9zA	111	1.39e+01		g.7.1.3	78881
1kcmA	270	1.40e+01		d.129.3.4	72300
1s35A	214	1.43e+01			
1jv2B	692	1.46e+01		b.1.15.1	67338
				c.62.1.1	67339
				d.200.1.1	67340
				g.3.11.6	67341
				g.3.11.6	67342
1olsA	400	1.55e+01			
1upaA	573	1.92e+01			
1cfzA	162	2.01e+01	1cfzA	c.56.1.1	33754
1l2lA	457	2.01e+01		c.72.1.3	77656
1o7tA	309	2.10e+01		c.94.1.1	86645
1mr8A	93	2.10e+01	1b4cA	a.39.1.2	17186
1m7yA	435	2.19e+01		c.67.1.4	78761
1m4jA	142	2.20e+01		d.109.1.2	78602
1cx4A	305	2.21e+01		b.82.3.2	59099
				b.82.3.2	59100
1crb	134	2.45e+01	1hmt	b.60.1.2	27220
3sdhA	146	2.80e+01	3sdhA	a.1.1.2	14984
1j1uA	306	2.85e+01		c.26.1.1	83980
1pbyC	79	2.97e+01			
1lla	628	2.97e+01	1lla	a.85.1.1	18485
				a.86.1.1	18496
				b.1.18.3	21861
1neq	74	3.03e+01	1neq	a.35.1.2	17063
1b8gA	429	3.22e+01	1b8gA	c.67.1.4	34499
1k6kA	143	3.24e+01		a.174.1.1	77274
1s5lI	38	3.28e+01			
1mkeA	152	3.38e+01		b.55.1.4	79231
1c4kA	730	3.51e+01	1ordA	c.23.1.4	31273
				c.67.1.5	34502
				d.125.1.1	41123
1mwqA	101	3.81e+01			
1gca	309	3.99e+01	1gca	c.93.1.1	35659