PFRMAT RR
TARGET T0209
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length
REMARK or to a limited set of high scoring pairs.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRG
LEQFSHLWLIFQFDQIQQGKWQPTVRPPRLGGNQRVGVFASRATHRPNPL
GLSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQS
SFAQEKLPVKLTVEFTEQAKSAVKKREEKRPHLSRFIRQVLEQDPRPAYQ
QGKPSDRIYGMSLYEFNVKWRIKAGTVNCVEVIEIEKDK
58 95 0 8 0.46665
80 140 0 8 0.4641
47 73 0 8 0.37825
12 121 0 8 0.3757
10 93 0 8 0.36805
90 135 0 8 0.3655
59 102 0 8 0.3434
58 139 0 8 0.3145
60 90 0 8 0.26605
58 138 0 8 0.2618
63 127 0 8 0.25075
60 119 0 8 0.24905
22 34 0 8 0.238
6 35 0 8 0.2363
107 165 0 8 0.23205
58 140 0 8 0.2278
73 126 0 8 0.2244
47 142 0 8 0.2244
88 136 0 8 0.22015
51 110 0 8 0.22015
49 71 0 8 0.2142
47 58 0 8 0.2091
24 95 0 8 0.20655
4 88 0 8 0.20655
58 80 0 8 0.20485
34 51 0 8 0.19975
51 75 0 8 0.1972
28 80 0 8 0.1972
58 73 0 8 0.1955
73 117 0 8 0.1938
22 61 0 8 0.1921
11 120 0 8 0.1887
42 110 0 8 0.1819
22 137 0 8 0.1768
35 161 0 8 0.1751
35 163 0 8 0.17
END