PFRMAT RR
TARGET T0209
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximate of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artifical neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRG
LEQFSHLWLIFQFDQIQQGKWQPTVRPPRLGGNQRVGVFASRATHRPNPL
GLSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQS
SFAQEKLPVKLTVEFTEQAKSAVKKREEKRPHLSRFIRQVLEQDPRPAYQ
QGKPSDRIYGMSLYEFNVKWRIKAGTVNCVEVIEIEKDK
88 136 0 8 0.3
58 95 0 8 0.298
80 140 0 8 0.295
90 135 0 8 0.293
10 93 0 8 0.288
91 133 0 8 0.285
59 133 0 8 0.285
90 122 0 8 0.278
60 119 0 8 0.276
58 138 0 8 0.276
47 73 0 8 0.276
60 122 0 8 0.273
88 135 0 8 0.271
58 82 0 8 0.268
59 99 0 8 0.266
59 102 0 8 0.261
12 121 0 8 0.261
58 139 0 8 0.259
10 94 0 8 0.259
58 135 0 8 0.255
11 120 0 8 0.255
60 90 0 8 0.248
93 133 0 8 0.243
88 120 0 8 0.235
57 98 0 8 0.232
8 133 0 8 0.23
57 134 0 8 0.228
47 108 0 8 0.226
63 127 0 8 0.224
62 133 0 8 0.224
59 108 0 8 0.224
60 102 0 8 0.218
120 136 0 8 0.216
58 73 0 8 0.216
51 110 0 8 0.216
103 127 0 8 0.21
94 133 0 8 0.21
61 95 0 8 0.21
58 80 0 8 0.21
11 98 0 8 0.21
80 95 0 8 0.204
120 142 0 8 0.2
10 91 0 8 0.2
98 116 0 8 0.198
34 51 0 8 0.198
38 77 0 8 0.196
67 76 0 8 0.194
49 76 0 8 0.194
44 76 0 8 0.194
28 80 0 8 0.194
76 126 0 8 0.192
56 76 0 8 0.192
57 110 0 8 0.191
35 123 0 8 0.191
24 95 0 8 0.191
100 152 0 8 0.189
63 110 0 8 0.189
59 82 0 8 0.189
54 76 0 8 0.189
47 58 0 8 0.189
23 102 0 8 0.189
6 17 0 8 0.189
132 152 0 8 0.187
37 90 0 8 0.187
66 122 0 8 0.185
50 76 0 8 0.185
49 81 0 8 0.185
133 167 0 8 0.183
58 141 0 8 0.183
55 76 0 8 0.183
49 128 0 8 0.183
6 35 0 8 0.183
88 157 0 8 0.181
62 127 0 8 0.181
54 110 0 8 0.181
42 76 0 8 0.181
27 58 0 8 0.181
12 30 0 8 0.181
77 102 0 8 0.18
58 81 0 8 0.18
54 115 0 8 0.18
42 124 0 8 0.18
41 73 0 8 0.18
13 105 0 8 0.18
12 69 0 8 0.18
68 122 0 8 0.178
58 68 0 8 0.178
42 110 0 8 0.178
7 68 0 8 0.178
109 133 0 8 0.176
94 117 0 8 0.176
73 126 0 8 0.176
57 106 0 8 0.176
56 116 0 8 0.176
35 67 0 8 0.176
22 137 0 8 0.176
7 71 0 8 0.176
79 115 0 8 0.174
62 115 0 8 0.174
48 94 0 8 0.174
38 62 0 8 0.174
21 76 0 8 0.174
126 146 0 8 0.173
122 141 0 8 0.173
110 119 0 8 0.173
102 141 0 8 0.173
77 99 0 8 0.173
76 115 0 8 0.173
73 117 0 8 0.173
58 71 0 8 0.173
55 128 0 8 0.173
54 107 0 8 0.173
13 117 0 8 0.173
11 74 0 8 0.173
7 122 0 8 0.173
103 151 0 8 0.171
95 142 0 8 0.171
90 109 0 8 0.171
58 104 0 8 0.171
END