# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k1xA 659 2.37e+00 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1su8A 636 3.64e+00 e.26.1.2 -12015 2btvA 901 5.33e+00 2btvA e.28.1.1 43376 1mtpA 323 5.56e+00 e.1.1.1 85107 1ks2A 219 6.97e+00 unknown_sccs 72908 d.58.40.1 72909 1nnwA 252 7.02e+00 d.159.1.5 80674 1s0uA 408 7.29e+00 b.43.3.1 -4053 b.44.1.1 -4061 c.37.1.8 -7096 1fc2C 58 7.77e+00 1fc2C a.8.1.1 16345 155c 135 8.10e+00 1ycc a.3.1.1 15900 1jjyA 636 8.12e+00 1jjyA 1lkzA 219 8.66e+00 unknown_sccs 73991 d.58.40.1 73992 1crb 134 1.09e+01 1hmt b.60.1.2 27220 1em2A 229 1.22e+01 1em2A d.129.3.2 41321 1o8bA 219 1.22e+01 unknown_sccs 81180 d.58.40.1 81181 1uc2A 481 1.22e+01 unknown_sccs -11725 1aisA 182 1.37e+01 1ytbA d.129.1.1 41288 d.129.1.1 41289 1bdc 60 1.51e+01 1fc2C a.8.1.1 16350 1hw7A 255 1.52e+01 1i7fA d.193.1.1 61297 1m6kA 251 1.58e+01 e.3.1.1 78695 1i7fA 292 1.65e+01 1i7fA d.193.1.1 61888 1mn8A 100 1.66e+01 a.61.1.6 79318 1p94A 76 1.67e+01 unknown_sccs -916 1c0pA 363 1.75e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1jj2N 115 1.81e+01 1ffkL c.12.1.1 63099 1lqtA 456 1.81e+01 c.3.1.1 74198 c.4.1.1 74199 1s72O 116 1.90e+01 1o7fA 469 2.03e+01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1p5sA 203 2.07e+01 a.40.1.1 -900 1p9eA 331 2.09e+01 1dgnA 89 2.38e+01 1dgnA a.77.1.3 18436 1d0hA 469 2.52e+01 1a8d b.29.1.6 24265 b.42.4.2 25610 1j6rA 214 2.54e+01 d.173.1.2 71598 1ixxB 123 2.55e+01 1ixxB d.169.1.1 42336 1kuuA 202 2.63e+01 d.153.2.1 73019 1pbtA 244 2.69e+01 unknown_sccs -6866 2dpmA 284 2.73e+01 2dpmA c.66.1.28 34246 1kc6A 257 2.76e+01 c.52.1.19 68419 1shcA 195 2.84e+01 1shcA b.55.1.2 26992 1ffkL 115 3.02e+01 1ffkL c.12.1.1 30881 1diwA 441 3.04e+01 1a8d b.29.1.6 24264 b.42.4.2 25609 1mb1 130 3.08e+01 1bm8 d.34.1.1 38529 1te5A 257 3.09e+01 2cpgA 45 3.11e+01 2cpgA unknown_sccs 17455 1tia 279 3.16e+01 3tgl c.69.1.17 34737 1k6zA 141 3.21e+01 d.198.1.1 68247 1m2oA 768 3.33e+01 a.71.2.1 78480 b.2.8.1 78481 c.62.1.2 78482 d.109.2.1 78483 g.41.10.1 78484 1q16C 225 3.33e+01 unknown_sccs -12324 1jvsA 400 3.35e+01 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 3ygsP 97 3.64e+01 3ygsP a.77.1.3 18435 2frvB 536 3.84e+01 1h2rL e.18.1.1 43291