# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1im8A	244	3.31e-01		c.66.1.14	66212
1l2lA	457	2.33e+00		c.72.1.3	77656
1nh1A	330	3.57e+00		unknown_sccs	-11798
1v6sA	390	4.83e+00		c.86.1.1	-8567
1jqiA	388	5.43e+00		a.29.3.1	67087
				e.6.1.1	67088
1dzfA	215	6.17e+00	1dzfA	c.52.3.1	33344
				d.78.1.1	39753
1atiB	505	6.32e+00	1atiA	c.51.1.1	33197
				d.104.1.1	40746
1v7zA	260	8.62e+00		unknown_sccs	-6353
1hw7A	255	9.36e+00	1i7fA	d.193.1.1	61297
1bjx	110	1.13e+01	1bjx	c.47.1.2	32774
2bjxA	110	1.13e+01	1bjx	c.47.1.2	32776
1hg3A	225	1.18e+01	1hg3A	c.1.1.1	61025
1n71A	180	1.31e+01		d.108.1.1	85370
1c3oB	382	1.31e+01	1c3oB	c.8.3.1	30744
				c.23.16.1	31421
1q3kA	259	1.34e+01		unknown_sccs	-6335
1a04A	215	1.34e+01	1a04A	a.4.6.2	16234
				c.23.1.1	31089
1mzgA	146	1.52e+01		d.224.1.1	79696
1atiA	505	1.53e+01	1atiA	c.51.1.1	33196
				d.104.1.1	40745
2sxl	88	1.64e+01	1b7fA	d.58.7.1	39179
1q0eA	152	1.68e+01		b.1.8.1	-2798
1b87A	181	1.69e+01	1b87A	d.108.1.1	40797
1kzqA	289	1.78e+01		b.6.2.1	73374
				b.6.2.1	73375
3chy	128	1.89e+01	3chy	c.23.1.1	31038
1s2dA	167	1.92e+01		c.23.14.1	-6469
1cbjA	151	1.94e+01	1mfmA	b.1.8.1	22213
1i7fA	292	1.97e+01	1i7fA	d.193.1.1	61888
1hzoA	271	1.98e+01		e.3.1.1	71092
1alq	266	2.06e+01	1btl	e.3.1.1	42707
1qorA	327	2.10e+01	1qorA	b.35.1.2	24766
				c.2.1.1	29782
1e9pA	151	2.12e+01	1mfmA	b.1.8.1	22215
1m4jA	142	2.24e+01		d.109.1.2	78602
1cfzA	162	2.28e+01	1cfzA	c.56.1.1	33754
1e6mA	128	2.30e+01	3chy	c.23.1.1	31039
1a9xB	379	2.37e+01	1c3oB	c.8.3.1	30732
				c.23.16.1	31409
1dbqA	289	2.45e+01	1qpzA	c.93.1.1	35666
1cs0B	382	2.46e+01	1c3oB	c.8.3.1	30740
				c.23.16.1	31417
2sodB	152	2.49e+01	1mfmA	b.1.8.1	22242
1rdqE	350	2.67e+01		d.144.1.7	-11336
1tc5A	194	2.69e+01			
1bc5A	269	2.87e+01	1af7	a.58.1.1	17929
				c.66.1.8	34204
1h2bA	359	2.92e+01		b.35.1.2	-3679
				c.2.1.1	-5703
1o7tA	309	2.94e+01		c.94.1.1	86645
1cof	143	2.96e+01	1cof	d.109.1.2	40860
1xsoA	150	3.02e+01	1mfmA	b.1.8.1	22273
1cye	129	3.17e+01	3chy	c.23.1.1	31077
1af7	274	3.17e+01	1af7	a.58.1.1	17928
				c.66.1.8	34203
1se8A	301	3.25e+01			
1o1yA	239	3.35e+01		c.23.16.1	86554
1inlA	296	3.44e+01		c.66.1.17	66220
1c0nA	406	3.63e+01	1c0nA	c.67.1.3	34433
1j05B	121	3.64e+01		b.1.1.1	-2251
1aye	401	3.67e+01	1aye	c.56.5.1	33824
				d.58.3.1	39065
1fkqA	124	3.77e+01	3lzt	d.2.1.2	36601
1a1z	91	3.80e+01	1a1z	a.77.1.4	18427
1uf3A	228	3.88e+01		unknown_sccs	-11463
1cjcA	460	3.94e+01	1cjcA	c.3.1.1	30319
				c.4.1.1	30604