# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hxn 219 3.35e-01 1hxn b.66.1.1 27529 1rz1A 161 4.34e-01 b.45.1.2 -4088 1jlnA 297 4.75e-01 1pty c.45.1.2 63172 1cb0A 283 5.29e-01 1cb0A c.56.2.1 33790 1fzvA 132 6.41e-01 1vpfA g.17.1.1 60159 1qy5A 269 8.32e-01 d.122.1.1 -10958 1sr4B 261 1.02e+00 1dgwA 178 1.06e+00 1dgwA b.82.1.2 28090 1aohA 147 1.21e+00 1aohA b.2.2.2 22401 1vybA 238 1.25e+00 1b1cA 181 1.54e+00 1amoA c.23.5.2 31212 1bj7 156 2.06e+00 1bj7 b.60.1.1 27113 1jhnA 424 2.22e+00 b.29.1.12 70060 b.104.1.1 66722 1rz3A 201 2.49e+00 c.37.1.6 -7048 1dgwX 79 2.77e+00 1caxB b.82.1.2 28091 2madH 373 4.49e+00 2bbkH b.69.2.1 27639 1s3iA 310 5.37e+00 b.46.1.1 -4111 c.65.1.1 -8042 1dkzA 219 5.65e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1kwsA 261 6.34e+00 c.68.1.7 73083 1oz2A 331 6.50e+00 b.34.9.3 -3597 b.34.9.3 -3598 b.34.9.3 -3599 1ja1A 622 6.82e+00 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1ixmA 192 7.10e+00 1ixmA d.123.1.1 41114 1qqsA 174 7.52e+00 1nglA b.60.1.1 27143 1bd0A 388 7.90e+00 1bd0A b.49.2.2 26480 c.1.6.1 28642 1f3z 161 7.98e+00 1gpr b.84.3.1 28273 1obpA 159 8.34e+00 1obpA b.60.1.1 27092 1sftA 388 8.34e+00 1bd0A b.49.2.2 26482 c.1.6.1 28644 1hn2A 159 8.46e+00 b.60.1.1 65890 1gt1A 159 8.46e+00 b.60.1.1 -4436 1b6rA 355 9.42e+00 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1jmxB 349 9.57e+00 b.69.2.2 66906 2prd 174 9.72e+00 2prd b.40.5.1 25435 1larA 575 1.07e+01 1larA c.45.1.2 32693 c.45.1.2 32694 1ihjA 98 1.09e+01 1pdr b.36.1.1 62382 1ejeA 192 1.11e+01 1ejeA b.45.1.2 25757 3hhrB 203 1.16e+01 1axiB b.1.2.1 22005 b.1.2.1 22006 1bteA 97 1.19e+01 1bteA g.7.1.3 44463 1i1jA 108 1.20e+01 1i1jA b.34.2.1 61531 1vjnA 220 1.21e+01 unknown_sccs -11458 3dni 260 1.23e+01 3dni d.151.1.1 41791 1q6hA 224 1.23e+01 d.26.1.1 -9487 1xnaA 183 1.25e+01 1xnaA b.18.1.8 23773 1ii2A 524 1.26e+01 c.91.1.1 66146 c.109.1.1 66147 1ohvA 472 1.28e+01 c.67.1.4 -8181 1i8dA 213 1.41e+01 b.43.4.3 61953 b.43.4.3 61954 1i40A 175 1.42e+01 b.40.5.1 66024 1obwA 175 1.51e+01 2prd b.40.5.1 25416 1uldA 150 1.62e+01 b.29.1.3 -3423 1d2sA 170 1.74e+01 1d2sA b.29.1.4 24221 1s8fA 177 1.78e+01 1rybA 212 1.78e+01 c.56.3.1 -7858 1f8eA 388 1.89e+01 2qwc b.68.1.1 59694 1vhxA 150 1.89e+01 unknown_sccs -7663 1v84A 253 1.89e+01 2dnjA 260 1.93e+01 3dni d.151.1.1 41790 1gp1A 198 1.95e+01 1gp1A c.47.1.10 33059 1r64A 481 1.98e+01 b.18.1.20 -3151 c.41.1.1 -7297 1q38A 89 2.07e+01 b.1.2.1 -2765 1mjuL 219 2.09e+01 b.1.1.1 -2083 b.1.1.2 -2360 1p4uA 153 2.14e+01 b.1.10.2 87780 1pgs 314 2.14e+01 1pgs b.121.1.1 23653 b.121.1.1 23654 1o75A 415 2.24e+01 b.1.20.1 81117 b.1.20.1 81118 b.120.1.1 81119 1oi1A 221 2.26e+01 b.34.9.3 87037 b.34.9.3 87038 1dykA 394 2.32e+01 1dykA b.29.1.4 24223 b.29.1.4 24224 1d09B 153 2.56e+01 8atcB d.58.2.1 39015 g.41.7.1 45267 1vjhA 122 2.59e+01 d.129.3.1 -11037 1pmi 440 2.61e+01 1pmi b.82.1.3 28114 1j1bA 420 2.66e+01 d.144.1.7 -11312 1j05B 121 2.68e+01 b.1.1.1 -2251 1r7aA 504 2.68e+01 b.71.1.1 -4664 c.1.8.1 -5283 1gpqA 135 2.69e+01 d.233.1.1 83295 1nlbH 218 2.73e+01 b.1.1.1 80621 b.1.1.2 80622 1eajA 126 2.74e+01 1f5wA b.1.1.1 59401 1nqjA 119 2.77e+01 b.23.2.1 86031 2shpA 525 2.82e+01 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 1fo0B 112 2.82e+01 1kb5B b.1.1.1 20631 1luzA 88 2.92e+01 b.40.4.5 74271 1wejH 223 2.99e+01 1igtB b.1.1.1 20361 b.1.1.2 21353 1kzlA 208 3.00e+01 b.43.4.3 77635 b.43.4.3 77636 1nxzA 246 3.00e+01 b.122.1.2 86391 c.116.1.5 86392 1nls 237 3.20e+01 1nls b.29.1.1 23928 1mbxC 106 3.23e+01 d.45.1.2 78929 1v04A 355 3.26e+01 unknown_sccs -4592 1pa1A 310 3.29e+01 c.45.1.2 -7332 1uhgA 385 3.29e+01 e.1.1.1 88491 1ifc 132 3.32e+01 b.60.1.2 27173 1kwgA 645 3.38e+01 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1kao 167 3.61e+01 1ctqA c.37.1.8 32014 1he7A 126 3.61e+01 1wwcA b.1.1.4 60970 1gpc 218 3.62e+01 1gpc b.40.4.7 25393 1fy7A 278 3.70e+01 1fy7A d.108.1.1 40817 1f5fA 205 3.77e+01 1d2sA b.29.1.4 24222 2pil 159 3.81e+01 2pil d.24.1.1 38376 1o54A 277 3.83e+01 c.66.1.13 -8095 1ptvA 321 3.85e+01 1pty c.45.1.2 32665 1qzgA 187 3.87e+01 b.40.4.3 -3920 1iooA 196 3.87e+01 d.124.1.1 71250 1g7fA 298 3.87e+01 1pty c.45.1.2 60330 1tuhA 156 3.96e+01 1kb5B 117 3.96e+01 1kb5B b.1.1.1 20632