# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jhnA	424	8.52e-01		b.29.1.12	70060
				b.104.1.1	66722
1rz3A	201	1.51e+00		c.37.1.6	-7048
1fzvA	132	2.32e+00	1vpfA	g.17.1.1	60159
1dgwX	79	3.96e+00	1caxB	b.82.1.2	28091
1hxn	219	5.73e+00	1hxn	b.66.1.1	27529
1dgwA	178	7.35e+00	1dgwA	b.82.1.2	28090
1cq3A	233	1.10e+01	1cq3A	b.27.1.1	23923
1dkzA	219	1.31e+01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1h0bA	256	1.52e+01		b.29.1.11	83422
1iakB	185	1.57e+01	1iakB	b.1.1.2	21626
				d.19.1.1	38200
1s3iA	310	1.67e+01		b.46.1.1	-4111
				c.65.1.1	-8042
1bteA	97	1.67e+01	1bteA	g.7.1.3	44463
1mjuL	219	2.11e+01		b.1.1.1	-2083
				b.1.1.2	-2360
1i8dA	213	2.29e+01		b.43.4.3	61953
				b.43.4.3	61954
1a34A	159	2.44e+01	1a34A	b.121.7.1	23286
1ixmA	192	2.51e+01	1ixmA	d.123.1.1	41114
1xnaA	183	2.69e+01	1xnaA	b.18.1.8	23773
1umhA	184	2.90e+01		unknown_sccs	-3127
1f8eA	388	2.95e+01	2qwc	b.68.1.1	59694
1aohA	147	2.95e+01	1aohA	b.2.2.2	22401
1cb0A	283	3.17e+01	1cb0A	c.56.2.1	33790
2prd	174	3.20e+01	2prd	b.40.5.1	25435
1cs8A	316	3.22e+01	1cs8A	d.3.1.1	37065
1b6rA	355	3.41e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1tetL	216	3.65e+01	32c2A	b.1.1.1	19902
				b.1.1.2	20996
1hmt	132	3.71e+01	1hmt	b.60.1.2	27169
1n9pA	207	3.73e+01		b.1.18.16	80343
1sgvA	316	3.75e+01		b.122.1.1	-5120
				unknown_sccs	-10148
1sfp	114	3.77e+01	1sfp	b.23.1.1	23895
1ihjA	98	3.95e+01	1pdr	b.36.1.1	62382