# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1im8A	244	9.74e-02		c.66.1.14	66212
1dzfA	215	5.35e-01	1dzfA	c.52.3.1	33344
				d.78.1.1	39753
1dbqA	289	4.07e+00	1qpzA	c.93.1.1	35666
1nh1A	330	5.82e+00		unknown_sccs	-11798
1cfzA	162	6.13e+00	1cfzA	c.56.1.1	33754
1q0eA	152	6.46e+00		b.1.8.1	-2798
1cbjA	151	7.17e+00	1mfmA	b.1.8.1	22213
1xsoA	150	8.27e+00	1mfmA	b.1.8.1	22273
1nzhA	282	8.38e+00		d.151.1.2	-11398
1fkqA	124	9.49e+00	3lzt	d.2.1.2	36601
1ush	550	1.15e+01	1ush	d.114.1.1	40923
				d.159.1.2	42079
1l2uA	245	1.20e+01		c.1.2.3	73516
1kzqA	289	1.23e+01		b.6.2.1	73374
				b.6.2.1	73375
1rz3A	201	1.39e+01		c.37.1.6	-7048
1a4mA	349	1.48e+01	1a4mA	c.1.9.1	29014
1hp1A	516	1.66e+01		d.114.1.1	70976
				d.159.1.2	70977
1nbcA	155	1.98e+01	1nbcA	b.2.2.2	22390
1hw7A	255	2.04e+01	1i7fA	d.193.1.1	61297
1a9xB	379	2.05e+01	1c3oB	c.8.3.1	30732
				c.23.16.1	31409
1m4jA	142	2.08e+01		d.109.1.2	78602
1v6sA	390	2.10e+01		c.86.1.1	-8567
1rv3A	483	2.12e+01			
1js1X	324	2.23e+01		c.78.1.1	71834
				c.78.1.1	71835
1af7	274	2.36e+01	1af7	a.58.1.1	17928
				c.66.1.8	34203
1hd7A	318	2.57e+01	1bix	d.151.1.1	41780
1bj4A	470	2.58e+01	1bj4A	c.67.1.4	34479
1p4cA	380	2.59e+01		c.1.4.1	-5201
1ne6A	283	2.72e+01		b.82.3.2	-4918
				b.82.3.2	-4919
1rdqE	350	2.91e+01		d.144.1.7	-11336
2dri	271	2.92e+01	2dri	c.93.1.1	35637
1mr7A	209	2.93e+01		b.81.1.3	-4798
1iukA	140	3.03e+01		c.2.1.8	83712
1fkx	349	3.17e+01	1a4mA	c.1.9.1	29018
1a04A	215	3.19e+01	1a04A	a.4.6.2	16234
				c.23.1.1	31089
1b35B	255	3.43e+01	1b35B	b.121.4.1	23334
1ii7A	333	3.46e+01	1ii7A	d.159.1.4	62415
1bjx	110	3.48e+01	1bjx	c.47.1.2	32774