# List of top-scoring protein chains for T0208.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i60A 278 2.93e-03 c.1.15.4 71118 1lwjA 441 1.09e+00 b.71.1.1 74303 c.1.8.1 74304 1r4vA 171 1.13e+00 1l0wA 580 1.42e+00 b.40.4.1 73426 d.74.4.1 73427 d.104.1.1 73428 1gjiA 275 2.21e+00 b.1.18.1 70187 b.2.5.3 70188 1j1nA 492 3.53e+00 c.94.1.1 83978 1d2fA 390 3.61e+00 1d2fA c.67.1.3 34411 1cdoA 374 4.20e+00 2ohxA b.35.1.2 24747 c.2.1.1 29763 1g6oA 330 4.46e+00 1g6oA c.37.1.11 32430 1vjzA 341 4.68e+00 1fa2A 498 5.17e+00 1byb c.1.8.1 28797 1n3lA 372 8.54e+00 c.26.1.1 79966 1odzA 386 8.80e+00 c.1.8.3 86889 1m4xA 413 8.96e+00 i.6.1.1 78627 1m3yA 413 9.01e+00 b.121.2.3 78579 b.121.2.3 78580 1c7nA 399 9.14e+00 1d2fA c.67.1.3 34413 1od8A 313 9.22e+00 c.1.8.3 86838 1e0vA 313 9.33e+00 1taxA c.1.8.3 59149 1f60B 94 9.42e+00 1b64 d.58.12.1 39307 1xas 299 9.58e+00 1taxA c.1.8.3 28891 1j5qA 437 9.98e+00 b.121.2.3 77084 b.121.2.3 77085 1ovlA 271 1.02e+01 a.123.1.1 87455 1fc4A 401 1.10e+01 1bs0A c.67.1.4 59760 1b24A 188 1.13e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1ijeB 90 1.14e+01 1b64 d.58.12.1 62488 1p2mA 245 1.17e+01 1gvyA 383 1.30e+01 c.1.8.3 76359 1j9yA 385 1.33e+01 1j9yA c.1.8.3 62791 1r7oA 395 1.33e+01 1liyA 528 1.35e+01 b.58.1.1 78006 c.1.12.1 78007 c.49.1.1 78008 1liuA 528 1.35e+01 b.58.1.1 77970 c.1.12.1 77971 c.49.1.1 77972 1lixA 528 1.35e+01 b.58.1.1 77994 c.1.12.1 77995 c.49.1.1 77996 1liwA 528 1.37e+01 b.58.1.1 77982 c.1.12.1 77983 c.49.1.1 77984 1b78A 193 1.37e+01 1b78A c.51.4.1 33221 1qqfA 277 1.51e+01 1c3d a.102.4.4 18875 1l9cA 389 1.56e+01 c.3.1.2 77815 d.16.1.3 77816 1el5A 389 1.59e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 1mtyD 512 1.66e+01 1mhyD a.25.1.2 16742 1fz1A 527 1.67e+01 1mhyD a.25.1.2 16744 1lk3A 160 1.77e+01 a.26.1.3 73950 1k1eA 180 1.89e+01 c.108.1.5 67995 1fo6A 304 1.94e+01 1erzA d.160.1.2 59923 1p5dX 463 2.01e+01 1btc 491 2.02e+01 1byb c.1.8.1 28791 1byb 495 2.03e+01 1byb c.1.8.1 28790 1b1yA 500 2.03e+01 1byb c.1.8.1 28796 1k2yX 463 2.07e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1s6yA 450 2.10e+01 1lfwA 470 2.18e+01 c.56.5.4 77942 d.58.19.1 77943 1hvxA 515 2.21e+01 1bli b.71.1.1 27721 c.1.8.1 28708 2ilk 160 2.25e+01 2ilk a.26.1.3 16885 1ilk 151 2.30e+01 2ilk a.26.1.3 16886 1uypA 432 2.31e+01 1np7A 489 2.40e+01 a.99.1.1 80677 c.28.1.1 80678 1bf2 750 2.52e+01 1bf2 b.1.18.2 21860 b.71.1.1 27787 c.1.8.1 28774 1dot 686 2.55e+01 1nnt c.94.1.2 35876 c.94.1.2 35877 2ffhA 425 2.55e+01 1ng1 a.24.13.1 16965 a.36.1.1 17122 c.37.1.10 32276 1ygpA 879 2.61e+01 1a8i c.87.1.4 35540 1nd7A 374 2.69e+01 1mioA 533 2.70e+01 1qguA c.92.2.3 35601 1uasA 362 2.71e+01 b.71.1.1 88388 c.1.8.1 88389 1in7A 334 2.71e+01 1hqcA a.4.5.11 62603 c.37.1.20 62604 1e53A 59 2.72e+01 1e53A g.49.1.2 45356 1in5A 334 2.74e+01 1hqcA a.4.5.11 62599 c.37.1.20 62600 1bez 310 2.89e+01 1b6g c.69.1.8 34666 1jkgA 140 2.89e+01 d.17.4.2 66795 1dfcA 493 2.99e+01 1dfcA b.42.5.1 25616 b.42.5.1 25617 b.42.5.1 25618 b.42.5.1 25619 1lox 662 3.01e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1p4sA 181 3.01e+01 1q6gA 495 3.02e+01 1azrA 128 3.03e+01 1nwpA b.6.1.1 22983 1q6cA 495 3.03e+01 1ukoA 495 3.04e+01 1ukpA 495 3.04e+01 1sgoA 139 3.06e+01 1q6dA 495 3.09e+01 1j7kA 334 3.22e+01 1hqcA a.4.5.11 62695 c.37.1.20 62696 1n7kA 234 3.26e+01 c.1.10.1 85374 1mr8A 93 3.29e+01 1b4cA a.39.1.2 17186 1in6A 334 3.29e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1in4A 334 3.31e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1og8A 406 3.35e+01 1dd8A 406 3.35e+01 1dd8A c.95.1.1 35932 c.95.1.1 35933 1oeqA 418 3.37e+01 1nzrA 128 3.44e+01 1nwpA b.6.1.1 22959 1h4fA 406 3.44e+01 1eno 312 3.50e+01 1enp c.2.1.2 29905 1gr7A 128 3.62e+01 b.6.1.1 70381 1hdeA 310 3.63e+01 1b6g c.69.1.8 34675 1b6g 310 3.69e+01 1b6g c.69.1.8 34661 1ede 310 3.73e+01 1b6g c.69.1.8 34662 1f91A 406 3.82e+01 1dd8A c.95.1.1 59713 c.95.1.1 59714 1in8A 334 3.83e+01 1hqcA a.4.5.11 62605 c.37.1.20 62606 3psg 370 3.84e+01 1smrA b.50.1.2 26841 1kdvA 370 3.84e+01 c.41.1.2 68486 1aznA 128 3.85e+01 1nwpA b.6.1.1 23003 1qjhA 101 3.85e+01 1ris d.58.14.1 39326 1ek4A 418 3.89e+01 1dd8A c.95.1.1 59436 c.95.1.1 59437 1ilsA 128 3.93e+01 1nwpA b.6.1.1 22955 1ga6A 372 3.97e+01 1ga1A c.41.1.2 32556 1h5bC 113 3.98e+01 b.1.1.1 60640