CreatePredAlphaCost pred_alpha2k alpha11 T0207.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0207.t04.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 4 near_backbone 6 way_back 6 dry5 10 dry6.5 10 dry8 10 dry12 2 \ phobic_fit 5 \ sidechain 2 \ bystroff 5 \ soft_clashes 80 backbone_clashes 2 \ break 200 \ pred_alpha2k 5 \ pred_alpha04 5 \ constraints 5 \ hbond_geom 0.1 \ hbond_geom_backbone 0.1 \ hbond_geom_beta 0.5 \ hbond_geom_beta_pair 2 \ known_ssbond 0.5 // Add the following for extra-cellular proteins: # maybe_ssbond 0.5 SSBond C11 C14 # Try burying a saltbridge Hbond D53.OD1 R57.NH2 1.0 Hbond D53.OD2 R57.NH1 1.0