(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0207 XcR50, X. campestris
    • gi|48238854|ref|ZP_00246600.1|_4:80 COG0526: Thiol-disulfide isomerase and thioredoxins [Bacillus anthracis str. Vollum]
    • gi|22983445|ref|ZP_00028631.1|_7:79 COG0526: Thiol-disulfide isomerase and thioredoxins [Burkholderia fungorum]
    • gi|23058310|ref|ZP_00083385.1|_4:76 COG0526: Thiol-disulfide isomerase and thioredoxins [Pseudomonas fluorescens PfO-1]
              10        20             30                40        50  
              |         |              |                 |         |  
   1 MALTLYQRDDCHLCDQAVEALAQARA.....GAFFSVFID.....D...DAALESAYGLRVPVLR
   2 MALTLYQRDDCHLCDQAVEALAQARA.....GAFFSVFID.....D...DAALESAYGLRVPVLR
   3 MKVVLYTKKDCGLCVKAKQVLQEVQCeys..FQIEEIDIY.....E...DNDLLEKYHLMIPVVE
   4 MKVVLYTKKDCGLCVKAKQVLQEVQCeys..FQIEEIDIY.....E...DNDLLEKYHLMIPVVE
   5 MKVVLYTKNDCGLCVKAKQVLQEVQCeys..FQIEEIDIY.....E...DNDLLEKYHLMIPVVE
   6 MKVVLYTKKDCGLCVKAKQVLQEVQCeys..FQIEEIDIY.....E...DNDLLEKYHLMIPVVE
   7 MKVVLYTKKDCGLCVKAKQVLQEVQCeys..FQIEEIDIY.....E...DNDLLEKYHLMIPVVE
   8 MPLTLYQRDDCHLCDQAVEVVAQARA.....GDFDSVFID.....D...DAALEAVYGARVPVLR
   9 --VTLIRKPGCHLCDDAQQVIEKVCGdlg..VPWEQKDIT.....Q...DAELHREYWEQIPVVL
  10 MKLTLMFREYCSLCHKMRDELKPFQDeyg..FGLEVVDVD.....E...NPVLEEKYNELVPVLL
  11 MKLTLMFREYCSLCHKMRDALKPFQNeyg..FGLEVVDVD.....E...NPVLEEKYNELVPVLL
  12 ---TLYGRGWCHLCDDMRDALAPVAAefg..VAVDYIDID.....T...DAALVARYDEDVPVLL
  13 --ITLYSTEGCHLCEMAYELVEQAGIa....EQVQVIDIA.....F...DDALFSRYGVTIPVLN
  14 -QVTIYGKPECCLCDDALKVLEAVRKrip..FDIEKRDIS.....G...NADLIERYGLSIPVIF
  15 --LTLYGRAWCHLCDDMRTALAPLLAefg..ATVEVVDVD.....T...DPTLEARYNERVPVLV
  16 -ECQLFGTLGCHLCEVAEAVLMPFVEhg...LLVELVDIA.....D...DEAWVERYGLRIPVLR
  17 -LVTLIRKPGCHLCDDAQLVVEKVCAelg..VPWEGKDIT.....E...DRQLHDQYWEQIPVVL
  18 -ECQLFGTLGCHLCEVAEAVLMPLVDhg...LLVELVDIA.....E...SEPLFERYGLIIPVLR
  19 ---TLYSTEGCHLCEMAFALVSQVGLa....EQTDIIDIA.....F...DDELFSRYGVTIPVLK
  20 MTLTLYFREYCSLCHQMLAELAPWRErhg..FELEVVDVD.....A...DPALEARFNELVPVLM
  21 -ECQLFGTLGCHLCEVAEAVLMPFVEhg...LLVELVDIA.....D...DEAWVEHYGLRIPVLR
  22 MELILYSKPGCHLCEGLMEKLAQINSlt...IELEVRDIT.....T...DEQWWAAYQYEIPVLV
  23 -VLTLFTKHPCPLCDEAKEVLQPYKNr....FILQEVDITlp...E...NSTWYERYKFDIPVFH
  24 ---TLYSTEGCHLCEMAYALLNEVGLt....KQVDVVEIA.....F...NDELFSRYAVTIPVVA
  25 -ECQLFGTLGCHLCEQAEGLLMSFVEhg...LQVELVDIA.....E...DESQAERYGLRIPVLR
  26 -VLTLFTKAPCPLCDEAKEVLQPYKDr....FILQEVDITlp...E...NSTWYERYKFDIPVFH
  27 -ECQLFSTLGCPLCEVAEAVLLPFAIehg..LLVELVDIC.....E...DEQLLERYELRVPVLR
  28 -LLTLYTREPCPLCDDLVEQLEQGFAgqyr.LEKVYIDRK.....E...NVRFLRLFRHDIPVLF
  29 -KVTFYSKEQCPLCDKGLAKMKRLKDefs..FDLEVVDIY.....E...DDELLEKYQLIIPVVA
  30 -VVTMLGKAGCHLCEEALAVIARVCAetg..ARYEVRDLTt....A...DDKEKEEYWDKIPVIF
  31 -LLTLYTREPCPLCDDLVEQLEQGFAgqyr.LEKVYIDRK.....E...NVRFLRLFRHDIPVLF
  32 -ECQLFGTLGCHLCEVAEAELMPFVEhg...LLVELVDIA.....D...DESWFEAYSLRIPVLR
  33 -ECQLFSTLGCPLCEVAEAVLLPFAIehg..LMVELIDIG.....E...HEQLLERYELRVPVLR
  34 --IYFYTKENCPLCVEAEELLIMMNKqd...IPIIKKDIY.....A...SDELLEKYQLMIPVIK
  35 ---VLYHTEGCHLCELAAAL-LNAAE.....VRYTAIDIC.....D...DETLAERYGVSIPVVK
  36 -LLTLYTHDHCTLCDELVEQLEAQFAgr...YALEKVDITrk...E...NVRFLRLYRYDIPVLF
  37 MRLVLYSKEGCHLCEGLAEKLQQVRSlp...IELEIRDIS.....L...NPQWFAAYQFEVPVLC
  38 MLITLYSTEGCHLCEQAYSLLVEAGVq....EHVQVIDIA.....F...DDVLFSRYGVTIPVVS
  39 -VLTLFTKAPCPLCDEAKEVLQPYKD.....REVD-ITLP.....E...NSTWYERYKFDIPVFH
  40 MRLILYSKPGCHLCEGLQEKLEQIQNls...FELEIRDIT.....T...DENWFAAYQYEIPVLC
  41 MRLILYSKPGCHLCEGLEGKLKQIETpk...FDLEIRDIT.....T...SEDWFTAYQYEIPVLR
  42 MRLILYSKPGCHLCEGLQEKLEKIQNls...FELEIRDIT.....T...RDDWFSAYEYEVPVLY
  43 -QLTLYGRAYCHLCDDMKVALEPFRRdfp..FVLHEVDVD.....S...DPTLEDRFGELVPVLL
  44 MRLILYSKPGCHLCEGLQEKLEQIQNls...FELEIRDIT.....T...DENLFAAYQYEIPVLC
  45 --LVVYGREGCHLCEEMIASLRVLQKksw..FELEVINID.....G...NEHLTRLYNDRVPVLF
  46 -RVELIVRDNCGSCVRVREQIMPVLTaag..VHLVVSNVD.....D...DPALKAEFGDRVPVIL
  47 MELVFVTREGCGLCEKAERALWAL-G.....VPYLRRDVD.....R...DPELFARYTFRVPVLL
  48 --LILYSKPGCHLCEGLQEKLATLKE.....FTLEVRDIT.....R...REDWWQAYQYEIPVLY
  49 MNLILYSKPGCHLCEGLQEKLEEILKdp7cqFKLEVRDIT.....T...RDDWFQAYQYEVPVLC
  50 ---------GCHLCDEGREVVRDVAAatg..TTWAEVDVD.....A...DAELLRRYSDKVPVVL
  51 --VEIIVRDNCGSCVRVKAQILPIVEaag..IKLTERNVD.....Q...DASLKLEFGDRVPVIL
  52 --VEIIVRDNCGSCVRVKAQILPIVEaag..IKLTERNVD.....Q...DASLKLEFGDRVPVIL
  53 -QVELLTRAGCAICVRVAEQLAELSSelg..FDMMTIDVDvaastG...NPGLRAEFGDRLPVVL
  54 -KVELMVRSTCGSCARVAAQIRPVVAaag..AELVIVDVD.....S...DSALASEFGDRVPVVV
  55 --LVLYSRQGCCLCEGLEQRLIALNLaglg.ITLQVIDID.....GqdvSPELKARYDLEVPVLV
  56 -QVELLTRDGCTICERIHARLVELAAelg..FELSTTDVDaaaaaG...NPGLRTEFGDRLPVIL
  57 -TLTLYHRPGCHLCEQAQTHLDEL-G.....FAYQLHDIS.....G...DAALTARHGDHIPVLA
  58 --LVLYTKPGCCLCDGLKEKLQAAFLl10asLELQERDIT.....T...NPDWEQMYQYEIPVLA
  59 --WWLLGTSGCHLCDMAEQLMTQLQAvqr..ITYEHVDIAd....F...DEPLMMEFATTIPVIL
  60 -KLTFFSKPNCGLCDQAKEVIDDVFErk8kaVSLEIVNITdr...R...NAKWWKEYCFDIPVLH


                      60        70        
                      |         |        
   1 ...DPMG.....RE..LDWPFDAPRLRAWLDAAPHA
   2 ...DPMG.....RE..LDWPFDAPRLRAWLDAAP--
   3 ...MDGK.....QV..EYGNIHKGVIINYIKN----
   4 ...IDGK.....QV..EYGNIHKGVIINYIKN----
   5 ...IDGK.....QV..EYGNIHKGVIINYIKN----
   6 ...IDEK.....QV..EYGNIHKGVIINYIKN----
   7 ...IDEK.....QV..EYGNIHKGVIINYIKN----
   8 ...DARG.....RE..LEWPFDRVRLRAWLDDD---
   9 ...VDGA.....QH..TFWRVNEERLRKAL------
  10 ...AGDE.....EI..CHWFLDEDRLKQFL------
  11 ...AGDE.....EI..CHWFLDEDRLKQFL------
  12 ...LDGA.....EV..CRHRFDDARVRDAL------
  13 ...SQGS.....E-..LGWPFDLEKLKQWLDDNG--
  14 ...VDGK.....LA..FKHRIDKERLIALL------
  15 ...CDGV.....EL..CHYHVDAARVRAAL------
  16 r..CDNG.....AE..LNWPFEAEQVAAFL------
  17 ...VDGR.....QH..TFWRVNEERLRKVL------
  18 r..CDNG.....AE..LHWPFDTEQVVAFL------
  19 ...YQDS.....E-..LNWPFDLDELKNWLENNG--
  20 ...DGET.....EI..CHWHLDGARLAAHLG-----
  21 r..CDNG.....AE..LNWPFEAEQVAAFL------
  22 wr.SPTG.....EI..TLPRLSPRAPVSQL------
  23 ...LNGQ.....FL..MKHRVNTSKLETQL------
  24 ...YQGN.....E-..LNWPFDIQELREWLKHNG--
  25 r..RDSG.....DE..LDWPFGAEQVASFL------
  26 ...LNGQ.....FL..MMHRVNTSKLEKQLR-----
  27 r..VDTG.....DE..LEWPFDAPQVASFL------
  28 ...FNGQ.....FL..CMHRLNEEALRERL------
  29 ...INGE.....QV..DYGMIDEQKVKTW-------
  30 ...VDGK.....QH..DFWRVNEQRLRAAL------
  31 ...FNGQ.....FL..CMHRLNEEALGERL------
  32 r..VDTG.....AE..LGWPFNADQVVAF-------
  33 r..IDTG.....EE..LEWPFEAPQVVSFL------
  34 ...YNGK.....EL..FGHQLNIEDIDRLLN-----
  35 ...AQDE.....RC..LCWPFDATQLQEFL------
  36 ...LNGQ.....FL..CMHRLNADLLQKRL------
  37 ...RLDG.....DG..RETPLPRLAPR---------
  38 ...TQPVt28siSE..LGWPFDSADLAAWLKNN---
  39 ...LNGQ.....FL..MMHRVNTSKLEKQLR-----
  40 l..----.....--..--------------------
  41 le.LPEG.....EK..TIPRFSPRMS----------
  42 ...LSN-.....--..--------------------
  43 ...TGTPqt8arEL..CHYFLDGPAVQAWL------
  44 l..----.....--..--------------------
  45 av.NEDK.....EL..CHYFLDSDVIGAY-------
  46 ...VDDE.....EF..ASWEVDNDELAH--------
  47 ...WGEE.....VL..LEGAFGERELVE--------
  48 ...LG--.....--..--------------------
  49 ...VS--.....--..--------------------
  50 ...LDGV.....ER..DFGRLDAQRLRDALGG----
  51 ...VDDE.....EF..ACWEVDNDELANA-------
  52 ...VDDE.....EF..ACWEVDNDELANA-------
  53 ...LDGR.....EH..SYWEVDEHRLRADI------
  54 ...IDDE.....EF..SCWEVDNEELAA--------
  55 ...AQGR.....ELprVSPRLSSEGLFNWL------
  56 ...LDGR.....EH..SYWDIDEPRLRA--------
  57 ...LGDR.....VL..LRGVLSRSR-----------
  58 kvlPDGS.....EE..K-------------------
  59 ...TPTK.....R-..LNYPFSI-------------
  60 ...IE--.....--..--------------------