# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h75A 81 2.46e-05 1h75A c.47.1.1 60716 2trxA 108 3.11e-05 1thx c.47.1.1 32719 1thx 115 3.13e-05 1thx c.47.1.1 32732 1egr 85 3.54e-05 1kte c.47.1.1 32765 1j08A 226 3.73e-05 c.47.1.2 83855 c.47.1.2 83856 1hyuA 521 4.23e-05 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1kebA 108 4.31e-05 c.47.1.1 77341 1nw2A 105 8.86e-05 1ego 85 1.16e-04 1kte c.47.1.1 32767 1a8l 226 1.18e-04 1a8l c.47.1.2 32777 c.47.1.2 32778 1fo5A 85 1.26e-04 1fo5A c.47.1.1 59922 1jhb 106 3.43e-04 1kte c.47.1.1 32772 1g7oA 215 5.81e-04 1g7oA a.45.1.1 60332 c.47.1.5 60333 1kte 105 5.85e-04 1kte c.47.1.1 32771 1iloA 77 7.42e-04 c.47.1.1 66205 1fb6A 105 7.97e-04 1thx c.47.1.1 32739 3grx 82 8.34e-04 1aba c.47.1.1 32769 1qfnA 85 2.23e-03 1qfnA c.47.1.1 32768 1o6jA 150 2.42e-03 c.47.1.10 81089 1r26A 125 2.64e-03 1st9A 143 2.83e-03 1ewxA 146 5.48e-03 1ewxA c.47.1.10 33062 1qk8A 146 1.17e-02 1ewxA c.47.1.10 33061 1mek 120 1.20e-02 1erv c.47.1.2 32775 1aba 87 1.98e-02 1aba c.47.1.1 32760 1erv 105 2.97e-02 1erv c.47.1.1 32743 1eemA 241 3.77e-02 1eemA a.45.1.1 17717 c.47.1.5 33011 1eejA 216 4.35e-02 1eejA c.47.1.9 33057 d.17.3.1 38071 1aiu 105 5.76e-02 1erv c.47.1.1 32746 1tof 112 6.60e-02 1erv c.47.1.1 32733 1bjx 110 6.90e-02 1bjx c.47.1.2 32774 2bjxA 110 6.90e-02 1bjx c.47.1.2 32776 1i5gA 144 7.72e-02 1ewxA c.47.1.10 61784 1grx 85 9.45e-02 1kte c.47.1.1 32766 1pmt 203 1.33e-01 1a0fA a.45.1.1 17740 c.47.1.5 33034 1lu4A 136 1.33e-01 1kngA 156 1.53e-01 c.47.1.10 72777 1faaA 124 1.73e-01 1erv c.47.1.1 32738 1o8xA 146 2.27e-01 c.47.1.10 86681 1fe0A 68 2.41e-01 1cc8A d.58.17.1 39345 1n2aA 201 3.02e-01 1jfuA 186 3.03e-01 c.47.1.10 62940 1a0fA 201 3.09e-01 1a0fA a.45.1.1 17737 c.47.1.5 33031 1qgvA 142 3.20e-01 1qgvA c.47.1.8 33056 1pqnA 127 3.95e-01 1f9mA 112 4.26e-01 1erv c.47.1.1 32736 1uc7A 125 4.51e-01 1f2eA 201 5.59e-01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1gh2A 107 7.77e-01 1erv c.47.1.1 60515 1oyjA 231 9.09e-01 a.45.1.1 87597 c.47.1.5 87598 1j0fA 100 9.40e-01 1mdiA 105 9.51e-01 1erv c.47.1.1 32755 1gnuA 117 1.06e+00 d.15.1.3 65403 1fd8A 73 1.16e+00 1cc8A d.58.17.1 59770 1k0mA 241 1.29e+00 a.45.1.1 67949 c.47.1.5 67950 1grj 158 1.45e+00 1grj a.2.1.1 15691 d.26.1.2 38433 1cc8A 73 1.48e+00 1cc8A d.58.17.1 39343 1k0nA 241 1.70e+00 a.45.1.1 67953 c.47.1.5 67954 1eo6A 117 1.72e+00 1eo6A d.15.1.3 37609 1h5yA 253 1.85e+00 c.1.2.1 65638 1dfwA 25 2.21e+00 j.35.1.1 46255 1gwcA 230 2.51e+00 a.45.1.1 70660 c.47.1.5 70661 1s3iA 310 3.01e+00 1alq 266 3.21e+00 1btl e.3.1.1 42707 1kotA 119 3.49e+00 d.15.1.3 68732 1awe 130 3.50e+00 1awe b.55.1.1 26968 1pg5A 299 4.08e+00 1m0uA 249 4.57e+00 a.45.1.1 78359 c.47.1.5 78360 1pii 452 4.65e+00 1pii c.1.2.4 28559 c.1.2.4 28563 1cs1C 386 4.84e+00 1ibjA c.67.1.3 34401 1j4aA 333 5.06e+00 c.2.1.4 71502 c.23.12.1 71503 1f6bA 198 5.72e+00 c.37.1.8 64986 1of9A 77 5.98e+00 1i4nA 251 5.98e+00 c.1.2.4 71114 1e6bA 221 6.85e+00 1e6bA a.45.1.1 59294 c.47.1.5 59295 1o5iA 249 6.92e+00 1uaqA 158 7.00e+00 c.97.1.2 88386 1qvbA 481 7.22e+00 1qvbA c.1.8.4 28983 1j9bA 141 7.27e+00 c.47.1.12 66459 1gajA 257 7.40e+00 1gajA c.37.1.12 60416 1fw1A 216 8.03e+00 a.45.1.1 60051 c.47.1.5 60052 2gsq 202 8.14e+00 1pd21 a.45.1.1 17715 c.47.1.5 33009 1p6oA 161 8.19e+00 1cs1A 386 8.38e+00 1ibjA c.67.1.3 34399 1ex2A 189 8.42e+00 1ex2A c.51.4.2 33225 1qydA 313 9.14e+00 1oxsC 353 9.19e+00 b.40.6.3 87519 c.37.1.12 87520 1g291 372 9.27e+00 1g291 1skoA 143 9.42e+00 1qwrA 319 9.58e+00 1cpzA 68 9.64e+00 1aw0 d.58.17.1 39351 1aw0 72 1.05e+01 1aw0 d.58.17.1 39342 1nx8A 273 1.09e+01 b.82.2.8 86374 1at1A 310 1.11e+01 3csuA c.78.1.1 35168 c.78.1.1 35169 1f3aA 222 1.11e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1f3eA 386 1.14e+01 1pud c.1.20.1 29661 1k0dA 260 1.14e+01 a.45.1.1 67930 c.47.1.5 67931 1mgtA 174 1.17e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1pd21 199 1.20e+01 1pd21 1akr 147 1.20e+01 1rcf c.23.5.1 31152 1uc2A 481 1.21e+01 1g7eA 122 1.23e+01 1g7eA c.47.1.7 33055 2nmbA 160 1.24e+01 2nmbA b.55.1.2 26994 1jr3A 373 1.28e+01 a.80.1.1 63245 c.37.1.20 63246 1gtmA 419 1.28e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1oktA 211 1.30e+01 1ghpA 258 1.32e+01 1btl e.3.1.1 60520 1p8xA 344 1.33e+01 1lv7A 257 1.35e+01 c.37.1.20 78232 1bed 181 1.35e+01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1o1yA 239 1.36e+01 c.23.16.1 86554 1pms 136 1.36e+01 1awe b.55.1.1 26966 1oxxK 353 1.38e+01 1pioA 257 1.39e+01 1btl e.3.1.1 42719 1aw9 216 1.41e+01 1gnwA a.45.1.1 17736 c.47.1.5 33030 1bu5A 147 1.43e+01 5nul c.23.5.1 31155 1f4pA 147 1.43e+01 5nul c.23.5.1 59651 1r5yA 386 1.44e+01 1k4gA 386 1.44e+01 c.1.20.1 72054 1pxgA 382 1.51e+01 1nkl 78 1.51e+01 1nkl a.64.1.1 18140 1k0rA 366 1.51e+01 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1btkB 169 1.54e+01 1btkA b.55.1.1 26960 1cznA 169 1.55e+01 1rcf c.23.5.1 31181 1ne7A 289 1.56e+01 1d9tA 289 1.58e+01 1deaA 1ofv 169 1.58e+01 1rcf c.23.5.1 31184 3blm 257 1.59e+01 1btl e.3.1.1 42709 1o1zA 234 1.60e+01 c.1.18.3 86555 1gr0A 367 1.61e+01 c.2.1.3 70379 d.81.1.3 70380 1pud 386 1.63e+01 1pud c.1.20.1 29658 1kao 167 1.70e+01 1ctqA c.37.1.8 32014 1qlpA 394 1.71e+01 1ovaA e.1.1.1 42628 9apiA 347 1.73e+01 1ovaA e.1.1.1 42630 1i0rA 169 1.92e+01 1i0rA b.45.1.2 61489 1i0sA 169 1.92e+01 1i0rA b.45.1.2 61491 1a8y 367 1.92e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1ag9A 175 1.99e+01 1rcf c.23.5.1 31178 1mwyA 73 2.09e+01 d.58.17.1 79616 1v5xA 203 2.17e+01 1iyhA 198 2.20e+01 a.45.1.1 83790 c.47.1.5 83791 1ddmA 135 2.24e+01 2nmbA b.55.1.2 26993 2dri 271 2.31e+01 2dri c.93.1.1 35637 2fx2 147 2.36e+01 1rcf c.23.5.1 31158 1qhtA 775 2.39e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1jyeA 349 2.45e+01 c.93.1.1 67455 3csuA 310 2.47e+01 3csuA c.78.1.1 35094 c.78.1.1 35095 1j9eA 147 2.57e+01 c.23.5.1 62756 1pb7A 292 2.60e+01 c.94.1.1 88025 1art 396 2.62e+01 1ajsA c.67.1.1 34285 1sviA 195 2.63e+01 1f6dA 376 2.64e+01 1f6dA c.87.1.3 35467 1orrA 347 2.69e+01 2dabA 282 2.74e+01 1daaA e.17.1.1 43274 1daaA 282 2.75e+01 1daaA e.17.1.1 43270 1tgoA 773 2.78e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1jqeA 292 2.78e+01 c.66.1.19 71789 1gseA 221 2.81e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1l2tA 235 2.84e+01 c.37.1.12 73514 1vgvA 384 2.85e+01 1ur5A 309 2.88e+01 1ml4A 308 2.98e+01 c.78.1.1 79255 c.78.1.1 79256 1jraA 117 2.99e+01 a.24.15.1 67117 1ekxA 311 3.03e+01 3csuA c.78.1.1 35088 c.78.1.1 35089 1b65A 375 3.03e+01 1b65A d.154.1.1 42020 1e19A 314 3.06e+01 1b7bA c.73.1.1 34967 1m2oB 190 3.07e+01 c.37.1.8 78485 1im8A 244 3.08e+01 c.66.1.14 66212 1r4wA 226 3.16e+01 1r5tA 142 3.18e+01 1qisA 396 3.27e+01 1ajsA c.67.1.1 34284 1bvyF 191 3.27e+01 1bvyF c.23.5.1 31207 3daaA 277 3.28e+01 1daaA e.17.1.1 43272 1fts 295 3.38e+01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1g4uS 383 3.45e+01 1g4uS a.24.11.1 16643 c.45.1.2 32691 1f2tB 148 3.45e+01 1f2tB 1e7lA 157 3.48e+01 1en7A a.140.4.1 64728 d.4.1.5 64729 1taq 832 3.55e+01 1taq a.60.7.1 18082 c.120.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1hucA 47 3.55e+01 1hucA d.3.1.1 37049 1ahxA 396 3.55e+01 1ajsA c.67.1.1 34293 1m12A 84 3.66e+01 a.64.1.1 84745 1mqiA 263 3.67e+01 1k3lA 221 3.68e+01 a.45.1.1 77229 c.47.1.5 77230 1k3yA 221 3.69e+01 a.45.1.1 77245 c.47.1.5 77246 1f37A 110 3.70e+01 1f37A c.47.1.11 33088 1mqdA 261 3.76e+01 c.94.1.1 85049 1m5dA 263 3.78e+01 c.94.1.1 78641 1jaxA 212 3.79e+01 c.2.1.6 66476 1jr8A 117 3.94e+01 a.24.15.1 67115 1gc5A 467 3.95e+01 1gc5A c.72.1.3 60429 1btn 106 3.97e+01 1btn b.55.1.1 26952