# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fo5A 85 6.21e-04 1fo5A c.47.1.1 59922 2trxA 108 7.86e-04 1thx c.47.1.1 32719 1egr 85 1.05e-03 1kte c.47.1.1 32765 1thx 115 1.15e-03 1thx c.47.1.1 32732 1ego 85 1.24e-03 1kte c.47.1.1 32767 1j08A 226 1.69e-03 c.47.1.2 83855 c.47.1.2 83856 1h75A 81 1.77e-03 1h75A c.47.1.1 60716 1kebA 108 1.86e-03 c.47.1.1 77341 1hyuA 521 1.89e-03 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1nw2A 105 1.98e-03 1a8l 226 3.57e-03 1a8l c.47.1.2 32777 c.47.1.2 32778 1kte 105 6.79e-03 1kte c.47.1.1 32771 1jhb 106 8.93e-03 1kte c.47.1.1 32772 1fb6A 105 9.15e-03 1thx c.47.1.1 32739 1o6jA 150 1.13e-02 c.47.1.10 81089 1iloA 77 1.29e-02 c.47.1.1 66205 1g7oA 215 1.43e-02 1g7oA a.45.1.1 60332 c.47.1.5 60333 1qk8A 146 2.56e-02 1ewxA c.47.1.10 33061 1ewxA 146 2.56e-02 1ewxA c.47.1.10 33062 1grx 85 3.49e-02 1kte c.47.1.1 32766 1qfnA 85 4.39e-02 1qfnA c.47.1.1 32768 1r26A 125 5.02e-02 3grx 82 5.43e-02 1aba c.47.1.1 32769 1st9A 143 7.83e-02 1eemA 241 8.93e-02 1eemA a.45.1.1 17717 c.47.1.5 33011 1erv 105 1.64e-01 1erv c.47.1.1 32743 1i5gA 144 2.20e-01 1ewxA c.47.1.10 61784 1aba 87 2.54e-01 1aba c.47.1.1 32760 1lu4A 136 3.47e-01 1aiu 105 4.14e-01 1erv c.47.1.1 32746 1pmt 203 4.16e-01 1a0fA a.45.1.1 17740 c.47.1.5 33034 1f9mA 112 4.94e-01 1erv c.47.1.1 32736 1faaA 124 4.97e-01 1erv c.47.1.1 32738 1o8xA 146 5.02e-01 c.47.1.10 86681 1bjx 110 5.75e-01 1bjx c.47.1.2 32774 2bjxA 110 5.75e-01 1bjx c.47.1.2 32776 1kngA 156 5.87e-01 c.47.1.10 72777 1tof 112 6.07e-01 1erv c.47.1.1 32733 1eejA 216 8.22e-01 1eejA c.47.1.9 33057 d.17.3.1 38071 1f6bA 198 9.25e-01 c.37.1.8 64986 1cc8A 73 1.01e+00 1cc8A d.58.17.1 39343 1fe0A 68 1.05e+00 1cc8A d.58.17.1 39345 1k0nA 241 1.15e+00 a.45.1.1 67953 c.47.1.5 67954 1k0mA 241 1.16e+00 a.45.1.1 67949 c.47.1.5 67950 1qgvA 142 1.49e+00 1qgvA c.47.1.8 33056 1jfuA 186 1.70e+00 c.47.1.10 62940 1n2aA 201 1.83e+00 1pqnA 127 1.84e+00 1oyjA 231 2.10e+00 a.45.1.1 87597 c.47.1.5 87598 1mek 120 2.14e+00 1erv c.47.1.2 32775 1gnuA 117 2.27e+00 d.15.1.3 65403 1fd8A 73 2.77e+00 1cc8A d.58.17.1 59770 1gh2A 107 3.20e+00 1erv c.47.1.1 60515 1f2eA 201 3.25e+00 1a0fA a.45.1.1 17745 c.47.1.5 33039 1h5yA 253 3.26e+00 c.1.2.1 65638 1kotA 119 3.45e+00 d.15.1.3 68732 1taq 832 3.75e+00 1taq a.60.7.1 18082 c.120.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1o1yA 239 4.77e+00 c.23.16.1 86554 1nx8A 273 5.43e+00 b.82.2.8 86374 1j0fA 100 5.47e+00 3csuA 310 5.58e+00 3csuA c.78.1.1 35094 c.78.1.1 35095 1e6bA 221 5.60e+00 1e6bA a.45.1.1 59294 c.47.1.5 59295 1uc7A 125 5.66e+00 1tlfA 301 5.72e+00 1tlfA c.93.1.1 35687 1eo6A 117 6.11e+00 1eo6A d.15.1.3 37609 1alq 266 6.15e+00 1btl e.3.1.1 42707 1a0fA 201 6.57e+00 1a0fA a.45.1.1 17737 c.47.1.5 33031 1s3iA 310 7.09e+00 1jyeA 349 7.39e+00 c.93.1.1 67455 1grj 158 7.42e+00 1grj a.2.1.1 15691 d.26.1.2 38433 2gsq 202 7.97e+00 1pd21 a.45.1.1 17715 c.47.1.5 33009 1at1A 310 8.05e+00 3csuA c.78.1.1 35168 c.78.1.1 35169 1uaqA 158 8.23e+00 c.97.1.2 88386 1p6oA 161 8.25e+00 1gwcA 230 8.66e+00 a.45.1.1 70660 c.47.1.5 70661 1g7eA 122 9.24e+00 1g7eA c.47.1.7 33055 1ekxA 311 9.75e+00 3csuA c.78.1.1 35088 c.78.1.1 35089 1dfwA 25 1.04e+01 j.35.1.1 46255 1m0uA 249 1.06e+01 a.45.1.1 78359 c.47.1.5 78360 1ojxA 263 1.15e+01 1cznA 169 1.20e+01 1rcf c.23.5.1 31181 1ofv 169 1.20e+01 1rcf c.23.5.1 31184 1m2dA 110 1.22e+01 c.47.1.11 78476 1im8A 244 1.25e+01 c.66.1.14 66212 1f6dA 376 1.28e+01 1f6dA c.87.1.3 35467 1vgvA 384 1.28e+01 1of9A 77 1.30e+01 1zfjA 491 1.30e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1m2bA 110 1.36e+01 c.47.1.11 78474 1uc2A 481 1.38e+01 1pii 452 1.39e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1pg5A 299 1.42e+01 1m2aA 110 1.46e+01 c.47.1.11 78472 1ex2A 189 1.47e+01 1ex2A c.51.4.2 33225 1o5iA 249 1.51e+01 1ddmA 135 1.52e+01 2nmbA b.55.1.2 26993 1qvbA 481 1.53e+01 1qvbA c.1.8.4 28983 1i4nA 251 1.62e+01 c.1.2.4 71114 1pd21 199 1.64e+01 1pd21 1bed 181 1.68e+01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1gr0A 367 1.69e+01 c.2.1.3 70379 d.81.1.3 70380 1k0rA 366 1.70e+01 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1nsj 205 1.70e+01 1nsj c.1.2.4 28560 1aw0 72 1.70e+01 1aw0 d.58.17.1 39342 2nmbA 160 1.72e+01 2nmbA b.55.1.2 26994 1v5xA 203 1.73e+01 1qydA 313 1.74e+01 1kqfB 294 1.75e+01 d.58.1.5 75900 f.23.22.1 75901 1f37A 110 1.81e+01 1f37A c.47.1.11 33088 1f3aA 222 1.88e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1oe8A 211 1.90e+01 a.45.1.1 86905 c.47.1.5 86906 1a8y 367 1.91e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1jr3A 373 1.93e+01 a.80.1.1 63245 c.37.1.20 63246 1mwyA 73 1.94e+01 d.58.17.1 79616 1gajA 257 1.97e+01 1gajA c.37.1.12 60416 1jlvA 209 1.97e+01 a.45.1.1 71729 c.47.1.5 71730 1f0kA 364 2.10e+01 1f0kA c.87.1.2 35465 1fw1A 216 2.15e+01 a.45.1.1 60051 c.47.1.5 60052 1r5pA 108 2.17e+01 1f2tB 148 2.29e+01 1f2tB 1pioA 257 2.37e+01 1btl e.3.1.1 42719 1nkl 78 2.39e+01 1nkl a.64.1.1 18140 1mgtA 174 2.41e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 3blm 257 2.43e+01 1btl e.3.1.1 42709 1j4aA 333 2.46e+01 c.2.1.4 71502 c.23.12.1 71503 1ne7A 289 2.50e+01 1g291 372 2.50e+01 1g291 1d9tA 289 2.51e+01 1deaA 1ghpA 258 2.59e+01 1btl e.3.1.1 60520 1j9bA 141 2.67e+01 c.47.1.12 66459 1inlA 296 2.73e+01 c.66.1.17 66220 1awe 130 2.77e+01 1awe b.55.1.1 26968 1cpzA 68 2.79e+01 1aw0 d.58.17.1 39351 1e7lA 157 2.88e+01 1en7A a.140.4.1 64728 d.4.1.5 64729 1a53 247 2.98e+01 1a53 c.1.2.4 28564 1mdiA 105 3.00e+01 1erv c.47.1.1 32755 1juk 248 3.06e+01 1a53 c.1.2.4 28567 1r4wA 226 3.17e+01 1igs 248 3.20e+01 1a53 c.1.2.4 28565 1f4pA 147 3.35e+01 5nul c.23.5.1 59651 1jjoC 261 3.41e+01 1m12A 84 3.46e+01 a.64.1.1 84745 1okgA 373 3.49e+01 1pms 136 3.54e+01 1awe b.55.1.1 26966 1ml4A 308 3.55e+01 c.78.1.1 79255 c.78.1.1 79256 1jq3A 296 3.56e+01 c.66.1.17 67079 1svb 395 3.56e+01 1svb b.1.18.4 21814 f.10.1.1 43827 1s48A 609 3.59e+01 1r5tA 142 3.61e+01 1btkA 169 3.62e+01 1btkA b.55.1.1 26959 2dri 271 3.65e+01 2dri c.93.1.1 35637 1osdA 72 3.72e+01 1lv7A 257 3.78e+01 c.37.1.20 78232 1akr 147 3.86e+01 1rcf c.23.5.1 31152 1aw9 216 3.87e+01 1gnwA a.45.1.1 17736 c.47.1.5 33030 1ur5A 309 3.89e+01