# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2trxA 108 5.59e-05 1thx c.47.1.1 32719 1egr 85 5.80e-05 1kte c.47.1.1 32765 1thx 115 8.44e-05 1thx c.47.1.1 32732 1nw2A 105 1.62e-04 1h75A 81 1.64e-04 1h75A c.47.1.1 60716 1ego 85 1.81e-04 1kte c.47.1.1 32767 1fo5A 85 2.66e-04 1fo5A c.47.1.1 59922 1j08A 226 2.71e-04 c.47.1.2 83855 c.47.1.2 83856 1kebA 108 2.91e-04 c.47.1.1 77341 1hyuA 521 4.02e-04 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1a8l 226 6.12e-04 1a8l c.47.1.2 32777 c.47.1.2 32778 1fb6A 105 7.28e-04 1thx c.47.1.1 32739 1kte 105 1.49e-03 1kte c.47.1.1 32771 1jhb 106 1.49e-03 1kte c.47.1.1 32772 1iloA 77 1.60e-03 c.47.1.1 66205 1o6jA 150 1.72e-03 c.47.1.10 81089 1g7oA 215 2.77e-03 1g7oA a.45.1.1 60332 c.47.1.5 60333 3grx 82 3.60e-03 1aba c.47.1.1 32769 1ewxA 146 4.67e-03 1ewxA c.47.1.10 33062 1st9A 143 5.13e-03 1r26A 125 5.83e-03 1qfnA 85 7.06e-03 1qfnA c.47.1.1 32768 1qk8A 146 7.32e-03 1ewxA c.47.1.10 33061 1grx 85 1.86e-02 1kte c.47.1.1 32766 1erv 105 1.90e-02 1erv c.47.1.1 32743 1eemA 241 2.49e-02 1eemA a.45.1.1 17717 c.47.1.5 33011 1aba 87 2.74e-02 1aba c.47.1.1 32760 1i5gA 144 3.57e-02 1ewxA c.47.1.10 61784 1lu4A 136 6.11e-02 1pmt 203 8.52e-02 1a0fA a.45.1.1 17740 c.47.1.5 33034 1kngA 156 9.51e-02 c.47.1.10 72777 1o8xA 146 1.01e-01 c.47.1.10 86681 1aiu 105 1.21e-01 1erv c.47.1.1 32746 1k0nA 241 1.29e-01 a.45.1.1 67953 c.47.1.5 67954 1k0mA 241 1.31e-01 a.45.1.1 67949 c.47.1.5 67950 1tof 112 1.41e-01 1erv c.47.1.1 32733 1eejA 216 2.06e-01 1eejA c.47.1.9 33057 d.17.3.1 38071 1bjx 110 2.47e-01 1bjx c.47.1.2 32774 2bjxA 110 2.47e-01 1bjx c.47.1.2 32776 1faaA 124 2.81e-01 1erv c.47.1.1 32738 1jfuA 186 2.87e-01 c.47.1.10 62940 1f9mA 112 2.99e-01 1erv c.47.1.1 32736 1fe0A 68 3.79e-01 1cc8A d.58.17.1 39345 1f2eA 201 4.43e-01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1n2aA 201 4.58e-01 1cc8A 73 5.79e-01 1cc8A d.58.17.1 39343 1oyjA 231 5.98e-01 a.45.1.1 87597 c.47.1.5 87598 1uc7A 125 8.90e-01 1qvbA 481 9.44e-01 1qvbA c.1.8.4 28983 1a0fA 201 9.59e-01 1a0fA a.45.1.1 17737 c.47.1.5 33031 1gwcA 230 1.03e+00 a.45.1.1 70660 c.47.1.5 70661 1jyeA 349 1.08e+00 c.93.1.1 67455 1gh2A 107 1.23e+00 1erv c.47.1.1 60515 1f3aA 222 1.62e+00 1pgtA a.45.1.1 17701 c.47.1.5 32995 1qgvA 142 1.74e+00 1qgvA c.47.1.8 33056 1tlfA 301 1.78e+00 1tlfA c.93.1.1 35687 1uc2A 481 1.86e+00 1e6bA 221 1.91e+00 1e6bA a.45.1.1 59294 c.47.1.5 59295 1g7eA 122 2.35e+00 1g7eA c.47.1.7 33055 1pqnA 127 2.36e+00 1j0fA 100 2.37e+00 1s3iA 310 2.40e+00 1gnuA 117 2.58e+00 d.15.1.3 65403 1k0rA 366 2.61e+00 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1pd21 199 2.98e+00 1pd21 1grj 158 3.04e+00 1grj a.2.1.1 15691 d.26.1.2 38433 1bed 181 3.36e+00 1fvkA a.44.1.1 17514 c.47.1.4 32808 1j9bA 141 3.54e+00 c.47.1.12 66459 1eo6A 117 3.68e+00 1eo6A d.15.1.3 37609 1jlvA 209 3.73e+00 a.45.1.1 71729 c.47.1.5 71730 1m0uA 249 3.75e+00 a.45.1.1 78359 c.47.1.5 78360 1iyhA 198 3.97e+00 a.45.1.1 83790 c.47.1.5 83791 1h5yA 253 4.02e+00 c.1.2.1 65638 1fw1A 216 4.18e+00 a.45.1.1 60051 c.47.1.5 60052 2gsq 202 4.20e+00 1pd21 a.45.1.1 17715 c.47.1.5 33009 1alq 266 4.40e+00 1btl e.3.1.1 42707 1kotA 119 4.55e+00 d.15.1.3 68732 1gseA 221 4.57e+00 1pgtA a.45.1.1 17667 c.47.1.5 32961 1j4aA 333 4.75e+00 c.2.1.4 71502 c.23.12.1 71503 1ojxA 263 4.77e+00 1v5xA 203 4.84e+00 1ex2A 189 4.93e+00 1ex2A c.51.4.2 33225 2nmbA 160 5.35e+00 2nmbA b.55.1.2 26994 1k3lA 221 5.50e+00 a.45.1.1 77229 c.47.1.5 77230 1k3yA 221 5.50e+00 a.45.1.1 77245 c.47.1.5 77246 1e2kA 331 5.51e+00 1qhiA c.37.1.1 31854 1nsj 205 5.75e+00 1nsj c.1.2.4 28560 1e19A 314 6.18e+00 1b7bA c.73.1.1 34967 1f37A 110 6.40e+00 1f37A c.47.1.11 33088 1mdiA 105 6.98e+00 1erv c.47.1.1 32755 3vtk 343 6.99e+00 1qhiA c.37.1.1 31884 1i4nA 251 7.03e+00 c.1.2.4 71114 1fd8A 73 7.42e+00 1cc8A d.58.17.1 59770 1of9A 77 7.63e+00 1at1A 310 7.72e+00 3csuA c.78.1.1 35168 c.78.1.1 35169 3csuA 310 8.04e+00 3csuA c.78.1.1 35094 c.78.1.1 35095 1dfwA 25 8.09e+00 j.35.1.1 46255 1cs1C 386 8.20e+00 1ibjA c.67.1.3 34401 1kimA 366 8.38e+00 1qhiA c.37.1.1 31864 1zfjA 491 9.02e+00 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 2ki5A 366 9.17e+00 1qhiA c.37.1.1 31862 1im8A 244 9.67e+00 c.66.1.14 66212 1ur5A 309 9.77e+00 1qhiA 366 1.02e+01 1qhiA c.37.1.1 31860 1e7lA 157 1.02e+01 1en7A a.140.4.1 64728 d.4.1.5 64729 1mek 120 1.06e+01 1erv c.47.1.2 32775 1ekxA 311 1.14e+01 3csuA c.78.1.1 35088 c.78.1.1 35089 1jqeA 292 1.17e+01 c.66.1.19 71789 1m2bA 110 1.18e+01 c.47.1.11 78474 1m2dA 110 1.19e+01 c.47.1.11 78476 1m2aA 110 1.19e+01 c.47.1.11 78472 1ffkC 246 1.25e+01 1ffkC c.22.1.1 31037 1s48A 609 1.25e+01 1aw9 216 1.25e+01 1gnwA a.45.1.1 17736 c.47.1.5 33030 1oktA 211 1.27e+01 1uaqA 158 1.28e+01 c.97.1.2 88386 1p6oA 161 1.29e+01 1o1yA 239 1.29e+01 c.23.16.1 86554 1jjoC 261 1.34e+01 1o5iA 249 1.36e+01 1f6bA 198 1.37e+01 c.37.1.8 64986 1gajA 257 1.40e+01 1gajA c.37.1.12 60416 1kq3A 376 1.41e+01 e.22.1.2 68790 1a8y 367 1.42e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1oe8A 211 1.45e+01 a.45.1.1 86905 c.47.1.5 86906 2dri 271 1.48e+01 2dri c.93.1.1 35637 1ddmA 135 1.49e+01 2nmbA b.55.1.2 26993 1jj2C 246 1.55e+01 1ffkC c.22.1.1 63087 1awe 130 1.59e+01 1awe b.55.1.1 26968 1nkl 78 1.61e+01 1nkl a.64.1.1 18140 1akr 147 1.66e+01 1rcf c.23.5.1 31152 1jr3A 373 1.66e+01 a.80.1.1 63245 c.37.1.20 63246 1d9tA 289 1.70e+01 1deaA 1ne7A 289 1.72e+01 1sayA 361 1.76e+01 1sayA c.2.1.4 30102 c.23.12.2 31362 1iu4A 331 1.77e+01 d.3.1.8 71430 1lv7A 257 1.77e+01 c.37.1.20 78232 1nx8A 273 1.81e+01 b.82.2.8 86374 1pvuA 154 1.82e+01 3pviA c.52.1.6 33306 1pjcA 361 1.84e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 1ghpA 258 1.85e+01 1btl e.3.1.1 60520 1r5tA 142 1.93e+01 1heiA 451 1.94e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1bu5A 147 1.98e+01 5nul c.23.5.1 31155 1igs 248 2.00e+01 1a53 c.1.2.4 28565 1g291 372 2.06e+01 1g291 1juk 248 2.07e+01 1a53 c.1.2.4 28567 1f4pA 147 2.10e+01 5nul c.23.5.1 59651 1fvkA 189 2.10e+01 1fvkA a.44.1.1 17490 c.47.1.4 32784 1j9eA 147 2.17e+01 c.23.5.1 62756 3blm 257 2.17e+01 1btl e.3.1.1 42709 1pg5A 299 2.19e+01 1aw0 72 2.29e+01 1aw0 d.58.17.1 39342 1mgtA 174 2.33e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1vicA 262 2.34e+01 1pioA 257 2.35e+01 1btl e.3.1.1 42719 1bg6 359 2.35e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1nox 205 2.36e+01 1nox d.90.1.1 40242 1ak4C 145 2.37e+01 1ak4C a.73.1.1 18321 1m9xC 146 2.38e+01 a.73.1.1 84907 1pii 452 2.39e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1mldA 314 2.39e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1a53 247 2.39e+01 1a53 c.1.2.4 28564 1o0uA 429 2.41e+01 c.118.1.1 80743 1pms 136 2.42e+01 1awe b.55.1.1 26966 1taq 832 2.44e+01 1taq a.60.7.1 18082 c.120.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1l2tA 235 2.52e+01 c.37.1.12 73514 1en7A 157 2.53e+01 1en7A a.140.4.1 64733 d.4.1.5 64734 1jvbA 347 2.55e+01 b.35.1.2 77181 c.2.1.1 77182 1c3pA 375 2.63e+01 1c3pA c.42.1.2 32606 1dsbA 189 2.66e+01 1fvkA a.44.1.1 17497 c.47.1.4 32791 2fx2 147 2.72e+01 1rcf c.23.5.1 31158 1p3jA 217 2.73e+01 1tul 108 2.73e+01 1tul b.85.5.1 28373 1vgvA 384 2.76e+01 1f6dA 376 2.90e+01 1f6dA c.87.1.3 35467 1svb 395 2.91e+01 1svb b.1.18.4 21814 f.10.1.1 43827 1mvoA 136 2.92e+01 c.23.1.1 79513 1j6uA 469 2.93e+01 c.5.1.1 77094 c.59.1.1 77095 c.72.2.1 77096 1hskA 326 2.93e+01 2mbr d.145.1.2 61241 d.146.1.1 61242 1m12A 84 2.94e+01 a.64.1.1 84745 1cs1A 386 2.99e+01 1ibjA c.67.1.3 34399 1kgsA 225 3.03e+01 a.4.6.1 68596 c.23.1.1 68597 1pjbA 361 3.03e+01 1sayA c.2.1.4 30103 c.23.12.2 31363 1osdA 72 3.21e+01 1qzmA 94 3.22e+01 1orrA 347 3.23e+01 1k66A 149 3.27e+01 1gqyA 475 3.32e+01 c.5.1.1 83305 c.59.1.1 83306 c.72.2.1 83307 1mwyA 73 3.37e+01 d.58.17.1 79616 1mai 131 3.39e+01 1mai b.55.1.1 26951 1dl2A 511 3.46e+01 1dl2A a.102.2.1 18844 1sdoA 203 3.47e+01 1cpzA 68 3.54e+01 1aw0 d.58.17.1 39351 1pxgA 382 3.55e+01 1qklA 127 3.57e+01 1qklA d.78.1.2 39754 1e8tA 454 3.57e+01 1e8tA b.68.1.1 59387 1stfI 98 3.59e+01 1stfI d.17.1.2 38006 1e8uA 454 3.68e+01 1e8tA b.68.1.1 59389 1btn 106 3.79e+01 1btn b.55.1.1 26952 1xat 212 3.81e+01 2xat b.81.1.3 28059 1p3dA 475 3.82e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1rkqA 282 3.83e+01 1ixcA 294 3.85e+01 a.4.5.37 83764 c.94.1.1 83765 2xat 212 3.86e+01 2xat b.81.1.3 28058 1c25 161 3.86e+01 1c25 c.46.1.1 32698 1jj2I 145 3.88e+01 1ffkG c.21.1.1 63094 1k4gA 386 3.89e+01 c.1.20.1 72054 1daaA 282 3.90e+01 1daaA e.17.1.1 43270 1usrA 454 3.91e+01 1jraA 117 3.96e+01 a.24.15.1 67117 1f2tB 148 3.98e+01 1f2tB