# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1egr 85 3.82e-07 1kte c.47.1.1 32765 1ego 85 5.02e-07 1kte c.47.1.1 32767 1h75A 81 1.03e-06 1h75A c.47.1.1 60716 2trxA 108 1.06e-06 1thx c.47.1.1 32719 1kebA 108 1.90e-06 c.47.1.1 77341 1fo5A 85 1.97e-06 1fo5A c.47.1.1 59922 1nw2A 105 6.55e-06 1thx 115 2.35e-05 1thx c.47.1.1 32732 1kte 105 3.87e-05 1kte c.47.1.1 32771 1a8l 226 6.96e-05 1a8l c.47.1.2 32777 c.47.1.2 32778 1j08A 226 1.26e-04 c.47.1.2 83855 c.47.1.2 83856 1iloA 77 1.31e-04 c.47.1.1 66205 1grx 85 1.97e-04 1kte c.47.1.1 32766 1jhb 106 2.20e-04 1kte c.47.1.1 32772 3grx 82 2.24e-04 1aba c.47.1.1 32769 1qfnA 85 2.28e-04 1qfnA c.47.1.1 32768 1fb6A 105 3.69e-04 1thx c.47.1.1 32739 1r26A 125 1.76e-03 1aba 87 2.35e-02 1aba c.47.1.1 32760 1erv 105 2.65e-02 1erv c.47.1.1 32743 1gnuA 117 3.24e-02 d.15.1.3 65403 1st9A 143 4.21e-02 1aiu 105 4.24e-02 1erv c.47.1.1 32746 1faaA 124 7.68e-02 1erv c.47.1.1 32738 1f9mA 112 1.10e-01 1erv c.47.1.1 32736 1mek 120 1.14e-01 1erv c.47.1.2 32775 1kotA 119 1.36e-01 d.15.1.3 68732 1eo6A 117 1.60e-01 1eo6A d.15.1.3 37609 1bjx 110 2.85e-01 1bjx c.47.1.2 32774 2bjxA 110 2.85e-01 1bjx c.47.1.2 32776 1qk8A 146 6.75e-01 1ewxA c.47.1.10 33061 1o6jA 150 8.58e-01 c.47.1.10 81089 1j0fA 100 9.64e-01 1jlnA 297 9.70e-01 1pty c.45.1.2 63172 1grj 158 1.02e+00 1grj a.2.1.1 15691 d.26.1.2 38433 1cc8A 73 1.77e+00 1cc8A d.58.17.1 39343 1ewxA 146 1.92e+00 1ewxA c.47.1.10 33062 1chc 68 2.00e+00 1chc g.44.1.1 45323 1tvxB 75 2.02e+00 1tvxA d.9.1.1 37442 1fd8A 73 2.11e+00 1cc8A d.58.17.1 59770 1pqnA 127 2.44e+00 1m12A 84 2.51e+00 a.64.1.1 84745 1qqsA 174 3.11e+00 1nglA b.60.1.1 27143 1qgvA 142 3.20e+00 1qgvA c.47.1.8 33056 1tvxA 75 3.21e+00 1tvxA d.9.1.1 37441 1hruA 188 3.63e+00 1hruA d.115.1.1 40926 1n83A 270 3.65e+00 a.123.1.1 80276 1napA 70 3.85e+00 1tvxA d.9.1.1 37445 1alq 266 3.93e+00 1btl e.3.1.1 42707 1of9A 77 4.07e+00 1n99A 166 5.32e+00 b.36.1.1 85459 b.36.1.1 85460 3blm 257 5.51e+00 1btl e.3.1.1 42709 1pmt 203 5.72e+00 1a0fA a.45.1.1 17740 c.47.1.5 33034 2gsq 202 6.29e+00 1pd21 a.45.1.1 17715 c.47.1.5 33009 1r5pA 108 7.06e+00 1fxrA 64 7.57e+00 1fxd d.58.1.4 38993 1jaxA 212 7.87e+00 c.2.1.6 66476 1jayA 212 8.28e+00 c.2.1.6 66478 1eejA 216 8.30e+00 1eejA c.47.1.9 33057 d.17.3.1 38071 1ghpA 258 8.74e+00 1btl e.3.1.1 60520 1ovxA 67 9.10e+00 1oyjA 231 1.01e+01 a.45.1.1 87597 c.47.1.5 87598 1emwA 88 1.01e+01 1emwA d.27.1.1 38448 1fxd 58 1.03e+01 1fxd d.58.1.1 38941 1fc1A 224 1.09e+01 1igtB b.1.1.2 21520 b.1.1.2 21521 1fc2D 224 1.10e+01 1igtB b.1.1.2 21516 b.1.1.2 21517 1dfwA 25 1.13e+01 j.35.1.1 46255 1pioA 257 1.14e+01 1btl e.3.1.1 42719 1l6xA 207 1.21e+01 b.1.1.2 73642 b.1.1.2 73643 1hyuA 521 1.26e+01 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1fe0A 68 1.30e+01 1cc8A d.58.17.1 39345 1dxsA 80 1.31e+01 1cokA a.60.1.2 17944 1jmuB 666 1.41e+01 1h6hA 143 1.43e+01 d.189.1.1 65681 1uc7A 125 1.44e+01 1nx8A 273 1.44e+01 b.82.2.8 86374 1h0cA 392 1.61e+01 c.67.1.3 83424 1avqA 228 1.71e+01 1avqA c.52.1.13 33326 1gh2A 107 1.75e+01 1erv c.47.1.1 60515 1nz6A 101 1.84e+01 a.2.3.1 86441 1dfuP 94 1.90e+01 1dfuP b.53.1.1 26936 1nmtA 392 1.93e+01 1nmtA d.108.1.2 40823 d.108.1.2 40824 1r5qA 102 1.93e+01 1sv7A 109 2.03e+01 1m2bA 110 2.14e+01 c.47.1.11 78474 1m2dA 110 2.23e+01 c.47.1.11 78476 1v6fA 151 2.26e+01 1m2aA 110 2.27e+01 c.47.1.11 78472 1g7oA 215 2.28e+01 1g7oA a.45.1.1 60332 c.47.1.5 60333 1b75A 94 2.31e+01 1dfuP b.53.1.1 26937 1ib8A 164 2.32e+01 b.38.2.1 71168 d.52.4.1 71169 1k0nA 241 2.35e+01 a.45.1.1 67953 c.47.1.5 67954 1dfd 64 2.44e+01 1fxd d.58.1.4 38995 1tof 112 2.50e+01 1erv c.47.1.1 32733 1pms 136 2.58e+01 1awe b.55.1.1 26966 1m0uA 249 2.63e+01 a.45.1.1 78359 c.47.1.5 78360 1j03A 102 2.64e+01 1g2lA 235 2.66e+01 b.47.1.2 65112 1btkB 169 2.67e+01 1btkA b.55.1.1 26960 1btkA 169 2.68e+01 1btkA b.55.1.1 26959 1fjsA 234 2.71e+01 1ucyE b.47.1.2 26336 1znf 27 2.78e+01 g.37.1.1 45036 2drpA 66 2.85e+01 2drpA g.37.1.1 45026 g.37.1.1 45027 1p94A 76 2.88e+01 2ait 74 3.01e+01 1hoe b.5.1.1 22837 1tgxA 60 3.02e+01 1tgxA g.7.1.1 44398 1ok0A 74 3.09e+01 1nkl 78 3.13e+01 1nkl a.64.1.1 18140 1lu4A 136 3.21e+01 1bxkA 355 3.27e+01 1bxkA c.2.1.2 29803 1h0jA 60 3.47e+01 g.7.1.1 83432 1cqkA 101 3.48e+01 1cqkA b.1.1.2 21547 1dax 64 3.51e+01 1fxd d.58.1.4 38996 1ddmA 135 3.69e+01 2nmbA b.55.1.2 26993 1k68A 140 3.69e+01 1gyfA 62 3.73e+01 1gyfA d.76.1.1 39749 1jw9B 249 3.77e+01 c.111.1.1 67377 1o9iA 266 3.78e+01 1pauA 147 3.78e+01 1pauA c.17.1.1 30994 1nmeA 146 3.89e+01 c.17.1.1 85874 1npiA 61 3.91e+01 g.3.7.1 80685 2fmr 65 3.93e+01 2fmr d.51.1.1 38808 1nxzA 246 3.94e+01 b.122.1.2 86391 c.116.1.5 86392 1jkvA 266 3.95e+01 a.25.1.2 71719