# TARGET T0207 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0207.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 215 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.049 0.001 0.001 0.001 0.012 0.001 0.937 2 A 0.846 0.007 0.001 0.001 0.010 0.002 0.133 3 L 0.974 0.001 0.001 0.001 0.001 0.001 0.024 4 T 0.994 0.001 0.001 0.001 0.001 0.001 0.004 5 L 0.984 0.001 0.001 0.001 0.001 0.001 0.013 6 Y 0.878 0.003 0.001 0.001 0.021 0.003 0.095 7 Q 0.445 0.016 0.001 0.001 0.071 0.007 0.460 8 R 0.064 0.022 0.004 0.001 0.255 0.029 0.626 9 D 0.004 0.003 0.030 0.003 0.115 0.816 0.029 10 D 0.004 0.005 0.070 0.007 0.131 0.690 0.094 11 C 0.004 0.013 0.104 0.033 0.176 0.057 0.612 12 H 0.006 0.057 0.120 0.147 0.126 0.313 0.231 13 L 0.006 0.021 0.136 0.312 0.087 0.230 0.209 14 C 0.001 0.002 0.055 0.815 0.012 0.022 0.092 15 D 0.001 0.001 0.011 0.979 0.001 0.006 0.002 16 Q 0.001 0.001 0.011 0.978 0.001 0.009 0.001 17 A 0.001 0.001 0.005 0.987 0.001 0.006 0.002 18 V 0.001 0.001 0.001 0.997 0.001 0.002 0.001 19 E 0.001 0.001 0.001 0.997 0.001 0.002 0.001 20 A 0.001 0.001 0.001 0.996 0.001 0.002 0.001 21 L 0.001 0.001 0.002 0.991 0.001 0.006 0.001 22 A 0.001 0.001 0.005 0.964 0.002 0.027 0.002 23 Q 0.001 0.001 0.013 0.873 0.005 0.102 0.006 24 A 0.001 0.001 0.021 0.491 0.013 0.446 0.027 25 R 0.003 0.002 0.026 0.060 0.063 0.643 0.202 26 A 0.023 0.006 0.031 0.012 0.142 0.131 0.655 27 G 0.054 0.002 0.030 0.005 0.344 0.196 0.369 28 A 0.380 0.009 0.010 0.001 0.146 0.056 0.398 29 F 0.762 0.007 0.002 0.001 0.018 0.004 0.206 30 F 0.946 0.002 0.001 0.001 0.007 0.001 0.044 31 S 0.973 0.001 0.001 0.001 0.001 0.001 0.025 32 V 0.960 0.003 0.001 0.001 0.003 0.001 0.033 33 F 0.893 0.006 0.001 0.001 0.009 0.003 0.087 34 I 0.513 0.010 0.017 0.008 0.076 0.121 0.255 35 D 0.119 0.016 0.024 0.006 0.222 0.286 0.329 36 D 0.038 0.017 0.024 0.012 0.438 0.168 0.303 37 D 0.016 0.017 0.026 0.078 0.178 0.040 0.644 38 A 0.001 0.001 0.060 0.864 0.008 0.061 0.006 39 A 0.001 0.001 0.026 0.940 0.002 0.028 0.003 40 L 0.001 0.001 0.024 0.953 0.002 0.011 0.008 41 E 0.005 0.003 0.019 0.933 0.006 0.020 0.014 42 S 0.004 0.001 0.029 0.839 0.005 0.112 0.012 43 A 0.004 0.001 0.043 0.737 0.020 0.174 0.022 44 Y 0.008 0.003 0.030 0.315 0.047 0.549 0.049 45 G 0.022 0.004 0.013 0.017 0.130 0.623 0.190 46 L 0.128 0.006 0.002 0.002 0.065 0.007 0.791 47 R 0.310 0.029 0.001 0.001 0.042 0.003 0.615 48 V 0.725 0.005 0.002 0.001 0.064 0.003 0.199 49 P 0.800 0.003 0.002 0.001 0.015 0.002 0.177 50 V 0.973 0.002 0.001 0.001 0.004 0.001 0.020 51 L 0.982 0.004 0.001 0.001 0.001 0.001 0.012 52 R 0.885 0.017 0.001 0.001 0.003 0.001 0.093 53 D 0.439 0.009 0.007 0.001 0.082 0.116 0.345 54 P 0.014 0.001 0.011 0.001 0.061 0.887 0.026 55 M 0.018 0.002 0.022 0.001 0.137 0.787 0.032 56 G 0.079 0.010 0.025 0.002 0.428 0.258 0.199 57 R 0.499 0.058 0.011 0.003 0.077 0.031 0.321 58 E 0.789 0.104 0.004 0.002 0.013 0.005 0.084 59 L 0.764 0.038 0.004 0.003 0.032 0.028 0.131 60 D 0.348 0.009 0.011 0.002 0.163 0.168 0.299 61 W 0.198 0.013 0.015 0.004 0.304 0.088 0.379 62 P 0.130 0.036 0.035 0.008 0.179 0.184 0.428 63 F 0.061 0.078 0.016 0.006 0.248 0.078 0.513 64 D 0.016 0.015 0.008 0.007 0.099 0.018 0.836 65 A 0.001 0.002 0.090 0.816 0.015 0.024 0.051 66 P 0.001 0.001 0.060 0.919 0.002 0.015 0.004 67 R 0.001 0.001 0.075 0.907 0.001 0.012 0.005 68 L 0.001 0.001 0.012 0.980 0.001 0.006 0.001 69 R 0.001 0.001 0.007 0.986 0.001 0.006 0.001 70 A 0.001 0.001 0.009 0.968 0.001 0.023 0.001 71 W 0.001 0.001 0.016 0.942 0.001 0.036 0.004 72 L 0.001 0.003 0.101 0.787 0.022 0.058 0.029 73 D 0.001 0.002 0.159 0.484 0.014 0.316 0.024 74 A 0.001 0.001 0.082 0.277 0.032 0.562 0.045 75 A 0.001 0.002 0.039 0.046 0.250 0.079 0.582 76 P 0.002 0.005 0.075 0.038 0.112 0.244 0.523 77 H 0.004 0.009 0.067 0.027 0.134 0.268 0.490 78 A 0.004 0.003 0.029 0.011 0.103 0.041 0.808