# List of top-scoring protein chains for T0207.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2tir 108 1.44e-11 1thx c.47.1.1 32721 2trxA 108 1.55e-11 1thx c.47.1.1 32719 1txxA 108 2.31e-11 1thx c.47.1.1 32724 1kebA 108 3.31e-11 c.47.1.1 77341 1m7tA 107 6.35e-11 c.47.1.1 78745 1srx 108 1.99e-10 1thx c.47.1.1 32729 1fo5A 85 4.49e-10 1fo5A c.47.1.1 59922 1nw2A 105 5.36e-10 1tho 109 5.77e-10 1thx c.47.1.1 32722 1nhoA 85 6.18e-10 1quwA 105 6.65e-10 1thx c.47.1.1 32735 1nswA 105 7.05e-10 1f6mC 108 1.18e-09 1thx c.47.1.1 32725 1fovA 82 1.77e-09 1qfnA c.47.1.1 32770 1r7hA 75 1.90e-09 1dbyA 107 2.90e-09 1thx c.47.1.1 32734 1gl8A 104 4.61e-09 c.47.1.1 65290 1fb6A 105 4.68e-09 1thx c.47.1.1 32739 1oazA 123 2.46e-08 1h75A 81 3.60e-08 1h75A c.47.1.1 60716 1thx 115 5.93e-08 1thx c.47.1.1 32732 3grx 82 6.59e-08 1aba c.47.1.1 32769 1kte 105 9.66e-08 1kte c.47.1.1 32771 1jhb 106 9.90e-08 1kte c.47.1.1 32772 1trs 105 2.34e-07 1erv c.47.1.1 32753 1erv 105 6.13e-07 1erv c.47.1.1 32743 1ert 105 8.00e-07 1erv c.47.1.1 32744 3trx 105 1.03e-06 1erv c.47.1.1 32757 1nm3A 241 1.16e-06 c.47.1.1 85866 c.47.1.10 85867 1ep7A 112 1.21e-06 c.47.1.1 64905 1aiu 105 1.33e-06 1erv c.47.1.1 32746 1ep8A 112 2.30e-06 c.47.1.1 64907 1r26A 125 3.60e-06 1mek 120 7.63e-06 1erv c.47.1.2 32775 1syrA 112 9.28e-06 1ego 85 1.26e-05 1kte c.47.1.1 32767 1b4qA 105 1.44e-05 1kte c.47.1.1 32773 1f9mA 112 1.49e-05 1erv c.47.1.1 32736 1faaA 124 1.60e-05 1erv c.47.1.1 32738 1cqgA 105 3.24e-05 1erv c.47.1.1 32756 1aba 87 3.26e-04 1aba c.47.1.1 32760 1aazA 87 3.71e-04 1aba c.47.1.1 32761 1j08A 226 8.43e-04 c.47.1.2 83855 c.47.1.2 83856 1grx 85 1.28e-03 1kte c.47.1.1 32766 1a8l 226 1.42e-03 1a8l c.47.1.2 32777 c.47.1.2 32778 1o73A 144 1.83e-03 c.47.1.10 86638 1kngA 156 3.41e-03 c.47.1.10 72777 1st9A 143 5.37e-03 1iloA 77 5.77e-03 c.47.1.1 66205 1jfuA 186 5.78e-03 c.47.1.10 62940 1gh2A 107 6.78e-03 1erv c.47.1.1 60515 1g7oA 215 8.72e-03 1g7oA a.45.1.1 60332 c.47.1.5 60333 1lu4A 136 9.54e-03 1fg4A 149 1.15e-02 1ewxA c.47.1.10 59814 1o6jA 150 1.17e-02 c.47.1.10 81089 1o81A 152 1.21e-02 c.47.1.10 81175 1eejA 216 1.23e-02 1eejA c.47.1.9 33057 d.17.3.1 38071 1oc9A 152 1.33e-02 c.47.1.10 86797 1erw 105 1.67e-02 1erv c.47.1.1 32745 1hyuA 521 1.70e-02 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1ezkA 153 2.69e-02 1ewxA c.47.1.10 33063 1ewxA 146 2.74e-02 1ewxA c.47.1.10 33062 1qk8A 146 2.74e-02 1ewxA c.47.1.10 33061 1okdA 154 2.75e-02 1uc7A 125 9.34e-02 1eemA 241 1.34e-01 1eemA a.45.1.1 17717 c.47.1.5 33011 1jzoA 216 2.11e-01 c.47.1.9 84267 d.17.3.1 84268 1jzdA 220 2.15e-01 c.47.1.9 84257 d.17.3.1 84258 1j0fA 100 5.06e-01 1j2oA 114 7.54e-01 g.39.1.3 84020 g.39.1.3 84021 1bed 181 7.72e-01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1iqzA 81 1.32e+00 d.58.1.4 66281 1h4uA 265 1.63e+00 1h4uA d.22.1.2 60622 g.3.11.5 60623 1e6bA 221 1.63e+00 1e6bA a.45.1.1 59294 c.47.1.5 59295 1o8xA 146 1.65e+00 c.47.1.10 86681 1epxA 370 1.70e+00 1fbaA c.1.10.1 29150 1gl4A 285 1.71e+00 d.22.1.2 65286 g.3.11.5 65287 1i5gA 144 1.98e+00 1ewxA c.47.1.10 61784 1pqnA 127 2.04e+00 1v2aA 210 2.09e+00 1qgvA 142 2.35e+00 1qgvA c.47.1.8 33056 2at2A 300 2.47e+00 3csuA c.78.1.1 35196 c.78.1.1 35197 1dfx 125 2.53e+00 1dfx b.1.13.1 22367 g.41.5.2 45255 1rk4A 243 2.91e+00 1m3vA 122 3.67e+00 g.39.1.3 84794 g.39.1.3 84795 1aw9 216 3.82e+00 1gnwA a.45.1.1 17736 c.47.1.5 33030 1lqyA 184 4.46e+00 d.167.1.1 74212 1fw1A 216 5.41e+00 a.45.1.1 60051 c.47.1.5 60052 1o5iA 249 6.02e+00 1a8y 367 6.07e+00 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1vdc 333 6.76e+00 1trb c.3.1.5 30545 c.3.1.5 30546 2trcP 217 6.78e+00 1b9yC c.47.1.6 33051 1b9yC 246 7.86e+00 1b9yC c.47.1.6 33052 1b9xC 246 8.20e+00 1b9yC c.47.1.6 33053 1ei3A 491 8.60e+00 i.9.1.1 46001 1pmt 203 9.84e+00 1a0fA a.45.1.1 17740 c.47.1.5 33034 1ii7A 333 1.00e+01 1ii7A d.159.1.4 62415 1k0mA 241 1.05e+01 a.45.1.1 67949 c.47.1.5 67950 2sas 185 1.05e+01 2sas a.39.1.5 17258 1qlwA 328 1.05e+01 1qlwA c.69.1.15 34722 1qlwB 328 1.06e+01 1qlwA c.69.1.15 34723 1n7uA 554 1.07e+01 b.126.1.1 85376 1n7vA 555 1.09e+01 b.126.1.1 85377 1frvB 536 1.17e+01 1h2rL e.18.1.1 43296 2frvB 536 1.22e+01 1h2rL e.18.1.1 43291 1r5aA 218 1.23e+01 1rgvA 80 1.28e+01 1vf6A 83 1.38e+01 1r5pA 108 1.46e+01 1pfc 113 1.49e+01 1cqkA b.1.1.2 21546 1bjx 110 1.54e+01 1bjx c.47.1.2 32774 1h5yA 253 1.56e+01 c.1.2.1 65638 1kjtA 119 1.59e+01 d.15.1.3 72622 1kotA 119 1.59e+01 d.15.1.3 68732 1gnuA 117 1.68e+01 d.15.1.3 65403 1mkp 144 1.70e+01 1vhrA c.45.1.1 32654 1ctt 294 1.72e+01 1ctt c.97.1.1 36022 c.97.1.1 36023 1dxgA 36 1.83e+01 1dxgA g.41.5.2 45247 1dfwA 25 1.91e+01 j.35.1.1 46255 1r5tA 142 1.93e+01 451c 82 2.03e+01 451c a.3.1.1 15904 1r4wA 226 2.04e+01 1of9A 77 2.05e+01 1n2aA 201 2.21e+01 1jlvA 209 2.24e+01 a.45.1.1 71729 c.47.1.5 71730 487dL 133 2.26e+01 1mmsA i.1.1.2 45839 1eqwA 156 2.29e+01 1yaiA b.1.8.1 22294 1jqmA 139 2.29e+01 i.1.1.1 63235 1eg0K 140 2.30e+01 1mmsA i.1.1.1 45817 1mmsA 140 2.30e+01 1mmsA a.4.7.1 16247 d.47.1.1 38766 1mj1L 141 2.30e+01 i.1.1.1 79178 1r2wA 141 2.33e+01 2napA 723 2.35e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1hruA 188 2.51e+01 1hruA d.115.1.1 40926 1rjdA 334 2.66e+01 1r3hA 260 2.76e+01 1pxgA 382 2.98e+01 1un2A 197 3.11e+01 1jlwA 219 3.12e+01 a.45.1.1 71741 c.47.1.5 71742 1fvjA 189 3.18e+01 1fvkA a.44.1.1 17500 c.47.1.4 32794 1rlgA 119 3.31e+01 1jr6A 142 3.31e+01 c.37.1.14 71821 1usvB 170 3.33e+01 1usuB 170 3.34e+01 1mp9A 198 3.35e+01 1jah 166 3.40e+01 1ctqA c.37.1.8 31972 3gbp 307 3.42e+01 1gca c.93.1.1 35661 2gbp 309 3.45e+01 1gca c.93.1.1 35657 1f53A 84 3.45e+01 1f53A b.11.1.4 23632 4ts1A 319 3.48e+01 2ts1 c.26.1.1 31565 1e3iA 376 3.48e+01 2ohxA b.35.1.2 24741 c.2.1.1 29757 1gca 309 3.50e+01 1gca c.93.1.1 35659 1tyaE 319 3.50e+01 2ts1 c.26.1.1 31570 1tydE 319 3.51e+01 2ts1 c.26.1.1 31567 1dbp 271 3.52e+01 2dri c.93.1.1 35639 1e3lA 376 3.52e+01 2ohxA b.35.1.2 24745 c.2.1.1 29761 1tybE 319 3.53e+01 2ts1 c.26.1.1 31569 1r5yA 386 3.55e+01 1wkf 386 3.55e+01 1pud c.1.20.1 29662 1ozqA 386 3.55e+01 1wkd 386 3.55e+01 1pud c.1.20.1 29664 1wke 386 3.55e+01 1pud c.1.20.1 29663 1efzA 386 3.55e+01 1pud c.1.20.1 29659 1pms 136 3.60e+01 1awe b.55.1.1 26966 1tyc 319 3.72e+01 2ts1 c.26.1.1 31568 1hywA 68 3.77e+01 1hywA d.186.1.1 61425 1gwjA 377 3.84e+01 c.1.4.1 70671 1lvl 458 3.88e+01 1lvl c.3.1.5 30567 c.3.1.5 30568 d.87.1.1 40205 1kit 757 3.94e+01 1kit b.29.1.8 24272 b.29.1.8 24273 b.68.1.1 27616