# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2trxA 108 4.17e-13 1thx c.47.1.1 32719 1nw2A 105 7.04e-12 1fb6A 105 2.69e-11 1thx c.47.1.1 32739 1thx 115 2.69e-10 1thx c.47.1.1 32732 1h75A 81 5.52e-10 1h75A c.47.1.1 60716 1erv 105 3.43e-09 1erv c.47.1.1 32743 1aiu 105 8.22e-09 1erv c.47.1.1 32746 1kte 105 1.10e-08 1kte c.47.1.1 32771 1r26A 125 7.72e-08 1f9mA 112 3.66e-07 1erv c.47.1.1 32736 1faaA 124 3.81e-07 1erv c.47.1.1 32738 1j08A 226 5.86e-07 c.47.1.2 83855 c.47.1.2 83856 1a8l 226 1.48e-06 1a8l c.47.1.2 32777 c.47.1.2 32778 1g7oA 215 2.21e-06 1g7oA a.45.1.1 60332 c.47.1.5 60333 1aba 87 2.82e-06 1aba c.47.1.1 32760 1kngA 156 3.64e-06 c.47.1.10 72777 1iloA 77 1.92e-05 c.47.1.1 66205 1uc7A 125 6.58e-05 1grx 85 8.42e-05 1kte c.47.1.1 32766 1eemA 241 9.87e-05 1eemA a.45.1.1 17717 c.47.1.5 33011 1st9A 143 1.90e-04 1lu4A 136 2.60e-04 1qk8A 146 3.15e-04 1ewxA c.47.1.10 33061 1jfuA 186 3.97e-04 c.47.1.10 62940 1k0mA 241 5.33e-04 a.45.1.1 67949 c.47.1.5 67950 1eejA 216 8.51e-04 1eejA c.47.1.9 33057 d.17.3.1 38071 1pqnA 127 7.01e-03 1j0fA 100 8.93e-03 1qgvA 142 9.96e-03 1qgvA c.47.1.8 33056 1a8y 367 1.65e-02 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1fw1A 216 1.78e-02 a.45.1.1 60051 c.47.1.5 60052 1i5gA 144 1.91e-02 1ewxA c.47.1.10 61784 1jlvA 209 2.12e-02 a.45.1.1 71729 c.47.1.5 71730 1o8xA 146 2.24e-02 c.47.1.10 86681 1n2aA 201 3.73e-02 1e6bA 221 4.55e-02 1e6bA a.45.1.1 59294 c.47.1.5 59295 1f3aA 222 6.22e-02 1pgtA a.45.1.1 17701 c.47.1.5 32995 1oyjA 231 6.26e-02 a.45.1.1 87597 c.47.1.5 87598 1k3yA 221 8.42e-02 a.45.1.1 77245 c.47.1.5 77246 1bjx 110 1.38e-01 1bjx c.47.1.2 32774 1a0fA 201 1.47e-01 1a0fA a.45.1.1 17737 c.47.1.5 33031 1f6bA 198 1.89e-01 c.37.1.8 64986 1bed 181 1.97e-01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1oe8A 211 2.30e-01 a.45.1.1 86905 c.47.1.5 86906 1qydA 313 3.52e-01 1f2eA 201 4.62e-01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1j3mA 129 5.59e-01 1fe0A 68 5.69e-01 1cc8A d.58.17.1 39345 1ek1A 554 6.29e-01 1cr6B c.108.1.2 43335 c.69.1.11 34685 1r5yA 386 6.71e-01 1j9bA 141 6.84e-01 c.47.1.12 66459 1pxgA 382 7.00e-01 1tlfA 301 7.23e-01 1tlfA c.93.1.1 35687 1pud 386 7.49e-01 1pud c.1.20.1 29658 1gnwA 211 8.44e-01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1oktA 211 9.06e-01 1hywA 68 9.89e-01 1hywA d.186.1.1 61425 1pd21 199 1.01e+00 1pd21 1o4vA 183 1.10e+00 c.23.8.1 86628 1k0dA 260 1.11e+00 a.45.1.1 67930 c.47.1.5 67931 1p6oA 161 1.17e+00 1jyeA 349 1.26e+00 c.93.1.1 67455 1dugA 234 1.26e+00 1b8xA a.45.1.1 17718 c.47.1.5 33012 1jx6A 342 1.61e+00 c.93.1.1 67406 1cc8A 73 1.64e+00 1cc8A d.58.17.1 39343 1iyhA 198 1.68e+00 a.45.1.1 83790 c.47.1.5 83791 1ojxA 263 2.28e+00 1r4wA 226 2.38e+00 1g8lA 411 2.44e+00 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1s0uA 408 2.57e+00 1v5xA 203 2.64e+00 1m0uA 249 2.85e+00 a.45.1.1 78359 c.47.1.5 78360 2gsq 202 3.27e+00 1pd21 a.45.1.1 17715 c.47.1.5 33009 1dekA 241 3.32e+00 1dekA c.37.1.1 31842 1gca 309 3.48e+00 1gca c.93.1.1 35659 1m2dA 110 3.48e+00 c.47.1.11 78476 1bd3A 243 3.52e+00 1bd3A c.61.1.1 34098 1qsgA 265 3.65e+00 1eny c.2.1.2 29935 1xjo 284 3.68e+00 1xjo c.56.5.4 33843 1oz9A 150 3.84e+00 1i1qB 192 3.86e+00 1qdlB c.23.16.1 61544 1fvkA 189 3.95e+00 1fvkA a.44.1.1 17490 c.47.1.4 32784 1f6dA 376 4.05e+00 1f6dA c.87.1.3 35467 1f37A 110 4.09e+00 1f37A c.47.1.11 33088 1pgtA 210 4.25e+00 1pgtA a.45.1.1 17515 c.47.1.5 32809 1ru8A 232 4.26e+00 1o5iA 249 4.30e+00 1k0rA 366 4.53e+00 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1b4pA 217 4.61e+00 a.45.1.1 83158 c.47.1.5 83159 1c3pA 375 4.77e+00 1c3pA c.42.1.2 32606 1dfwA 25 4.85e+00 j.35.1.1 46255 1ltzA 297 5.26e+00 d.178.1.1 74254 1s48A 609 5.49e+00 1pc6A 146 5.73e+00 1orrA 347 6.25e+00 1okgA 373 6.37e+00 1dvjA 246 6.70e+00 1dvjA c.1.2.3 28546 1kqfB 294 7.04e+00 d.58.1.5 75900 f.23.22.1 75901 6gsvA 217 7.12e+00 1b8xA a.45.1.1 17633 c.47.1.5 32925 1o9gA 250 7.38e+00 c.66.1.29 86692 1o0uA 429 7.69e+00 c.118.1.1 80743 1mp9A 198 7.69e+00 1g71A 347 8.02e+00 1g71A e.16.1.1 43268 1pjqA 457 8.18e+00 1hkkA 364 8.21e+00 1nsj 205 8.24e+00 1nsj c.1.2.4 28560 1a53 247 8.48e+00 1a53 c.1.2.4 28564 1im8A 244 8.60e+00 c.66.1.14 66212 1kv7A 488 8.61e+00 b.6.1.3 68873 b.6.1.3 68874 b.6.1.3 68875 1f4pA 147 8.71e+00 5nul c.23.5.1 59651 1inlA 296 9.20e+00 c.66.1.17 66220 1q9uA 130 9.37e+00 1i9sA 210 9.47e+00 1i9sA c.45.1.1 62099 1e5kA 201 9.68e+00 1fr9A c.68.1.8 34578 1o1zA 234 9.83e+00 c.1.18.3 86555 1sur 215 1.01e+01 1sur c.26.2.2 31620 1vheA 373 1.04e+01 1tml 286 1.04e+01 1tml c.6.1.1 30656 1gnuA 117 1.07e+01 d.15.1.3 65403 1q7lB 88 1.08e+01 1g2qA 187 1.11e+01 c.61.1.1 65117 1igs 248 1.13e+01 1a53 c.1.2.4 28565 1m2eA 135 1.14e+01 c.23.1.5 78478 2trcP 217 1.16e+01 1b9yC c.47.1.6 33051 1mai 131 1.17e+01 1mai b.55.1.1 26951 1km4A 247 1.19e+01 c.1.2.3 72740 1dl5A 317 1.30e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1o2dA 371 1.32e+01 e.22.1.2 86591 1ja9A 274 1.36e+01 c.2.1.2 62817 1uch 230 1.38e+01 1uch d.3.1.6 37129 1of9A 77 1.40e+01 1b0uA 262 1.42e+01 1b0uA c.37.1.12 32370 1jg5A 83 1.42e+01 d.205.1.1 66666 1uc2A 481 1.44e+01 1goiA 499 1.45e+01 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1us5A 314 1.46e+01 1sdsA 117 1.48e+01 1kutA 230 1.58e+01 d.143.1.1 73017 1ns5A 155 1.65e+01 c.116.1.3 80705 1mkp 144 1.65e+01 1vhrA c.45.1.1 32654 1ufyA 122 1.70e+01 d.79.1.2 88489 1kyqA 274 1.71e+01 c.2.1.11 73281 e.37.1.1 73282 3mag 307 1.71e+01 3mag c.66.1.25 34205 1ir6A 424 1.73e+01 c.107.1.2 71342 1lsuA 147 1.74e+01 c.2.1.9 74250 1zfjA 491 1.75e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1qysA 106 1.79e+01 7odcA 424 1.80e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1jb0F 164 1.82e+01 1jb0F f.23.16.1 62825 1axdA 209 1.84e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1aky 221 1.84e+01 1zin c.37.1.1 31896 g.41.2.1 45197 1qlwA 328 1.86e+01 1qlwA c.69.1.15 34722 1v39 322 1.90e+01 3mag c.66.1.25 34206 1vp9 322 1.90e+01 3mag c.66.1.25 34210 1gsoA 431 1.94e+01 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 2cblA 305 1.95e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1qq9A 284 1.98e+01 1xjo c.56.5.4 33841 1vpt 348 1.99e+01 3mag c.66.1.25 34207 1k66A 149 2.01e+01 1aisA 182 2.01e+01 1ytbA d.129.1.1 41288 d.129.1.1 41289 1h9sA 140 2.06e+01 1b9mA b.40.6.2 60843 b.40.6.2 60844 1i60A 278 2.11e+01 c.1.15.4 71118 1btn 106 2.12e+01 1btn b.55.1.1 26952 1mgtA 174 2.18e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1vhnA 318 2.22e+01 1pii 452 2.26e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1egaA 301 2.30e+01 1egaA c.37.1.8 32150 d.52.3.1 38836 1fjhA 257 2.31e+01 1fjhB c.2.1.2 29870 1a0rP 245 2.33e+01 1b9yC c.47.1.6 33054 1e19A 314 2.35e+01 1b7bA c.73.1.1 34967 1oxkB 134 2.41e+01 1obbA 480 2.46e+01 c.2.1.5 86760 d.162.1.2 86761 1db3A 372 2.46e+01 1db3A c.2.1.2 29813 1osdA 72 2.46e+01 1ovnA 248 2.48e+01 1fmcA 255 2.50e+01 1cydA c.2.1.2 29856 1lssA 140 2.52e+01 c.2.1.9 74246 1qhtA 775 2.63e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1kao 167 2.64e+01 1ctqA c.37.1.8 32014 1jilA 420 2.67e+01 c.26.1.1 66745 1r88A 280 2.67e+01 1fxoA 293 2.67e+01 1g0rA c.68.1.6 34524 1ig3A 263 2.70e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1ctqA 166 2.73e+01 1ctqA c.37.1.8 31965 1thfD 253 2.73e+01 1thfD c.1.2.1 28535 1dxeA 256 2.78e+01 1dxeA c.1.12.5 29310 3csuA 310 2.81e+01 3csuA c.78.1.1 35094 c.78.1.1 35095 1gc5A 467 2.83e+01 1gc5A c.72.1.3 60429 1c7sA 858 2.87e+01 1qba b.1.18.2 21812 b.2.2.3 22408 c.1.8.6 29011 d.92.2.1 40410 1h6hA 143 2.89e+01 d.189.1.1 65681 1g4wR 383 2.89e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1d2fA 390 2.90e+01 1d2fA c.67.1.3 34411 1omzA 293 2.93e+01 c.68.1.15 87093 1ddmA 135 2.95e+01 2nmbA b.55.1.2 26993 1l3kA 196 3.00e+01 d.58.7.1 73539 d.58.7.1 73540 1q5qA 259 3.03e+01 1bmdA 327 3.08e+01 1bmdA c.2.1.5 30139 d.162.1.1 42106 1r2fA 319 3.09e+01 1r2fA a.25.1.2 16800 1bdmA 327 3.11e+01 1bmdA c.2.1.5 30137 d.162.1.1 42104 1qvbA 481 3.14e+01 1qvbA c.1.8.4 28983 1jbeA 128 3.15e+01 3chy c.23.1.1 62845 1rjdA 334 3.19e+01 1ufoA 238 3.23e+01 1ex2A 189 3.23e+01 1ex2A c.51.4.2 33225 1nrzA 164 3.24e+01 c.38.1.1 86131 1nox 205 3.26e+01 1nox d.90.1.1 40242 1vi2A 300 3.30e+01 1qo2A 241 3.36e+01 1qo2A c.1.2.1 28533 1btkA 169 3.37e+01 1btkA b.55.1.1 26959 1d02A 202 3.41e+01 1d02A c.52.1.8 33313 1dbxA 158 3.41e+01 1dbuA d.116.1.1 40928 1vicA 262 3.44e+01 1c1dA 355 3.44e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1i74A 309 3.45e+01 1i74A c.107.1.1 61867 1pg5A 299 3.45e+01 1gvoA 364 3.51e+01 c.1.4.1 76357 1n82A 331 3.56e+01 1uroA 367 3.58e+01 1uroA c.1.22.1 29675 1ha1 184 3.65e+01 1ha1 d.58.7.1 39147 d.58.7.1 39148 1h61A 364 3.65e+01 1oyc c.1.4.1 60657 1oboA 169 3.67e+01 c.23.5.1 86776 1jj2R 84 3.69e+01 1ffkP d.12.1.1 63103 1gegA 256 3.70e+01 1ybvA c.2.1.2 29888 1rcqA 357 3.71e+01 1q7bA 244 3.77e+01 1i7qB 193 3.78e+01 1qdlB c.23.16.1 61902 2mnr 357 3.86e+01 2mnr c.1.11.2 29245 d.54.1.1 38889 1czyA 168 3.94e+01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1mwyA 73 3.96e+01 d.58.17.1 79616