# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2trxA 108 1.09e-13 1thx c.47.1.1 32719 1nw2A 105 2.55e-12 1fb6A 105 2.71e-11 1thx c.47.1.1 32739 1h75A 81 1.67e-10 1h75A c.47.1.1 60716 1thx 115 2.60e-10 1thx c.47.1.1 32732 1erv 105 2.15e-09 1erv c.47.1.1 32743 1aiu 105 2.24e-09 1erv c.47.1.1 32746 1kte 105 4.61e-09 1kte c.47.1.1 32771 1r26A 125 1.97e-08 1f9mA 112 6.88e-07 1erv c.47.1.1 32736 1faaA 124 8.40e-07 1erv c.47.1.1 32738 1aba 87 1.26e-06 1aba c.47.1.1 32760 1grx 85 1.46e-05 1kte c.47.1.1 32766 1j08A 226 1.09e-04 c.47.1.2 83855 c.47.1.2 83856 1a8l 226 1.28e-04 1a8l c.47.1.2 32777 c.47.1.2 32778 1iloA 77 1.37e-04 c.47.1.1 66205 1uc7A 125 1.51e-04 1kngA 156 2.49e-04 c.47.1.10 72777 1st9A 143 8.85e-04 1pqnA 127 6.49e-03 1j0fA 100 7.20e-03 1qk8A 146 1.05e-02 1ewxA c.47.1.10 33061 1lu4A 136 1.75e-02 1eejA 216 3.31e-02 1eejA c.47.1.9 33057 d.17.3.1 38071 1jfuA 186 5.29e-02 c.47.1.10 62940 1g7oA 215 5.75e-02 1g7oA a.45.1.1 60332 c.47.1.5 60333 1qgvA 142 6.26e-02 1qgvA c.47.1.8 33056 2trcP 217 1.73e-01 1b9yC c.47.1.6 33051 1bed 181 2.54e-01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1a8y 367 6.45e-01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1bjx 110 9.52e-01 1bjx c.47.1.2 32774 1k0mA 241 1.51e+00 a.45.1.1 67949 c.47.1.5 67950 1o8xA 146 1.51e+00 c.47.1.10 86681 1n2aA 201 2.27e+00 1a0fA 201 2.37e+00 1a0fA a.45.1.1 17737 c.47.1.5 33031 1m2dA 110 2.40e+00 c.47.1.11 78476 1gnuA 117 2.50e+00 d.15.1.3 65403 1f4pA 147 2.66e+00 5nul c.23.5.1 59651 1fw1A 216 3.08e+00 a.45.1.1 60051 c.47.1.5 60052 1of9A 77 3.15e+00 1i5gA 144 3.29e+00 1ewxA c.47.1.10 61784 1j9bA 141 3.42e+00 c.47.1.12 66459 1ddmA 135 4.30e+00 2nmbA b.55.1.2 26993 1ltzA 297 4.54e+00 d.178.1.1 74254 1g60A 260 4.75e+00 c.66.1.11 70151 1b1cA 181 4.92e+00 1amoA c.23.5.2 31212 1m12A 84 4.93e+00 a.64.1.1 84745 1jlvA 209 5.12e+00 a.45.1.1 71729 c.47.1.5 71730 1gsoA 431 5.23e+00 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 1q0eA 152 5.47e+00 1r5pA 108 6.09e+00 1r4wA 226 6.53e+00 1o4vA 183 6.98e+00 c.23.8.1 86628 1hjrA 158 7.56e+00 1hjrA c.55.3.6 33727 1m0uA 249 7.67e+00 a.45.1.1 78359 c.47.1.5 78360 1dfuP 94 7.67e+00 1dfuP b.53.1.1 26936 1ka9H 200 7.69e+00 c.23.16.1 77308 1ns5A 155 7.79e+00 c.116.1.3 80705 1cbjA 151 7.84e+00 1mfmA b.1.8.1 22213 1a0rP 245 8.08e+00 1b9yC c.47.1.6 33054 1fdr 248 8.47e+00 1fdr b.43.4.2 25653 c.25.1.1 31543 1ejbA 168 8.58e+00 1rvv1 c.16.1.1 59417 1ccwA 137 8.85e+00 1be1 c.23.6.1 31238 1iqzA 81 8.87e+00 d.58.1.4 66281 1e6bA 221 8.92e+00 1e6bA a.45.1.1 59294 c.47.1.5 59295 1f37A 110 9.04e+00 1f37A c.47.1.11 33088 1eo6A 117 9.35e+00 1eo6A d.15.1.3 37609 1nsj 205 9.56e+00 1nsj c.1.2.4 28560 1j3mA 129 9.90e+00 1sfe 180 1.04e+01 1sfe a.4.2.1 16073 c.55.7.1 33748 1f2eA 201 1.09e+01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1mp9A 198 1.10e+01 1zfjA 491 1.14e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1mmsA 140 1.34e+01 1mmsA a.4.7.1 16247 d.47.1.1 38766 1b0uA 262 1.37e+01 1b0uA c.37.1.12 32370 1tvxA 75 1.41e+01 1tvxA d.9.1.1 37441 1eemA 241 1.43e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1iyhA 198 1.48e+01 a.45.1.1 83790 c.47.1.5 83791 1fe0A 68 1.54e+01 1cc8A d.58.17.1 39345 2sas 185 1.55e+01 2sas a.39.1.5 17258 1i7pA 274 1.72e+01 b.43.4.2 66048 c.25.1.1 66049 1cc8A 73 1.78e+01 1cc8A d.58.17.1 39343 1h6hA 143 1.82e+01 d.189.1.1 65681 1gefA 123 1.87e+01 1gefA c.52.1.18 60465 2fxb 81 2.04e+01 2fxb 1lkkA 105 2.05e+01 1lckA d.93.1.1 40412 1hruA 188 2.06e+01 1hruA d.115.1.1 40926 1i9sA 210 2.08e+01 1i9sA c.45.1.1 62099 1c44A 123 2.12e+01 1qndA d.106.1.1 40795 1lxnA 99 2.34e+01 d.58.48.1 84737 1g5hA 454 2.37e+01 1g5hA c.51.1.1 60270 d.104.1.1 60271 1m3iA 471 2.50e+01 1kexA 155 2.61e+01 b.18.1.2 77350 1dvpA 220 2.61e+01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1nf3C 128 2.64e+01 b.36.1.1 85596 1o4wA 147 2.78e+01 c.120.1.1 86629 1nngA 153 2.82e+01 1mkp 144 2.88e+01 1vhrA c.45.1.1 32654 1oe8A 211 2.88e+01 a.45.1.1 86905 c.47.1.5 86906 1h9sA 140 2.96e+01 1b9mA b.40.6.2 60843 b.40.6.2 60844 1rypB 250 2.97e+01 1rypB d.153.1.4 41933 1uch 230 2.99e+01 1uch d.3.1.6 37129 1b66A 140 3.11e+01 1b66A d.96.1.2 40657 1gydB 315 3.19e+01 b.67.2.1 70751 1vsd 152 3.19e+01 1cxqA c.55.3.2 33625 1b00A 127 3.27e+01 3chy c.23.1.1 31122 1s2kA 206 3.31e+01 2vhbA 146 3.63e+01 2vhbA a.1.1.2 15629 3vub 101 3.67e+01 3vub b.34.6.1 24613 1mpuA 138 3.69e+01 d.169.1.1 85040 1ey4A 149 3.72e+01 1snc b.40.1.1 24815 1fjrA 195 3.92e+01 1fjrA b.102.1.1 59855 1j27A 102 3.94e+01 1f6bA 198 3.98e+01 c.37.1.8 64986 1h2cA 140 3.99e+01 b.31.1.1 83462 3pviA 157 3.99e+01 3pviA c.52.1.6 33300