This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA A A 3 3 NATAA L A 4 4 NATAA T A 5 5 NATAA L A 6 6 NATAA Y A 7 7 NATAA Q A 8 8 NATAA R A 9 9 NATAA D A 10 10 NATAA D A 11 11 NATRO C A 12 12 NATAA H A 13 13 NATAA L A 14 14 NATRO C A 15 15 NATAA D A 16 16 NATAA Q A 17 17 NATAA A A 18 18 NATAA V A 19 19 NATAA E A 20 20 NATAA A A 21 21 NATAA L A 22 22 NATAA A A 23 23 NATAA Q A 24 24 NATAA A A 25 25 NATAA R A 26 26 NATAA A A 27 27 NATAA G A 28 28 NATAA A A 29 29 NATAA F A 30 30 NATAA F A 31 31 NATAA S A 32 32 NATAA V A 33 33 NATAA F A 34 34 NATAA I A 35 35 NATAA D A 36 36 NATAA D A 37 37 NATAA D A 38 38 NATAA A A 39 39 NATAA A A 40 40 NATAA L A 41 41 NATAA E A 42 42 NATAA S A 43 43 NATAA A A 44 44 NATAA Y A 45 45 NATAA G A 46 46 NATAA L A 47 47 NATAA R A 48 48 NATAA V A 49 49 NATRO P A 50 50 NATAA V A 51 51 NATAA L A 52 52 NATAA R A 53 53 NATAA D A 54 54 NATRO P A 55 55 NATAA M A 56 56 NATAA G A 57 57 NATAA R A 58 58 NATAA E A 59 59 NATAA L A 60 60 NATAA D A 61 61 NATAA W A 62 62 NATRO P A 63 63 NATAA F A 64 64 NATAA D A 65 65 NATAA A A 66 66 NATRO P A 67 67 NATAA R A 68 68 NATAA L A 69 69 NATAA R A 70 70 NATAA A A 71 71 NATAA W A 72 72 NATAA L A 73 73 NATAA D A 74 74 NATAA A A 75 75 NATAA A A 76 76 NATRO P A 77 77 NATAA H A 78 78 NATAA A