SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2 5 \
	constraints 20 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.1 \
	hbond_geom_beta 0.4 \
	hbond_geom_beta_pair 1

// Took out phobic_fit, since structure SHOULD have long tail.
# 	phobic_fit 2 \


// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

# from T0206.t2k.dssp-ehl2.constraints
StrandConstraint	V110	S112	0.668
StrandConstraint	T125	S129	0.6488
StrandConstraint	F133	T142	0.6091
StrandConstraint	V147	V155	0.6331
StrandConstraint	P159	G162	0.6518
StrandConstraint	S187	I192	0.662
StrandConstraint	G197	L202	0.7972
HelixConstraint 	I208	H216	0.62

# from T0206.t2k.str2.constraints
StrandConstraint	V110	S112	0.822
StrandConstraint	I118	S119	0.626
StrandConstraint	T125	S129	0.792
StrandConstraint	F133	N141	0.849
StrandConstraint	V147	V155	0.675
StrandConstraint	P159	G162	0.713
StrandConstraint	S187	I192	0.848
StrandConstraint	G197	L202	0.818
HelixConstraint 	V213	H216	0.616


// Make the collagen structure:

Constraint P21.CG	P24.CG	9.2	9.5	10.5	0.02
Constraint P24.CG	P27.CG	9.2	9.5	10.5	0.02
Constraint P27.CG	P30.CG	9.2	9.5	10.5	0.02
Constraint P30.CG	P33.CG	9.2	9.5	10.5	0.02
Constraint P33.CG	P36.CG	9.2	9.5	10.5	0.02
Constraint P36.CG	P39.CG	9.2	9.5	10.5	0.02
Constraint P39.CG	P42.CG	9.2	9.5	10.5	0.02

Constraint P51.CG	P54.CG	9.2	9.5	10.5	0.02
Constraint P54.CG	P57.CG	9.2	9.5	10.5	0.02
Constraint P57.CG	P60.CG	9.2	9.5	10.5	0.02
Constraint P60.CG	P63.CG	9.2	9.5	10.5	0.02

Constraint P72.CG	P75.CG	9.2	9.5	10.5	0.02
Constraint P75.CG	P78.CG	9.2	9.5	10.5	0.02


Constraint P21.CG	P27.CG	16.7	17.1	17.5	0.02
Constraint P24.CG	P30.CG	16.7	17.1	17.5	0.02
Constraint P27.CG	P33.CG	16.7	17.1	17.5	0.02
Constraint P30.CG	P36.CG	16.7	17.1	17.5	0.02
Constraint P33.CG	P39.CG	16.7	17.1	17.5	0.02
Constraint P36.CG	P42.CG	16.7	17.1	17.5	0.02

Constraint P51.CG	P57.CG	16.7	17.1	17.5	0.02
Constraint P54.CG	P60.CG	16.7	17.1	17.5	0.02
Constraint P57.CG	P63.CG	16.7	17.1	17.5	0.02

Constraint P72.CG	P78.CG	16.7	17.1	17.5	0.02


Constraint G23.CA	G26.CA	8.3	8.6	8.9	0.02
Constraint G26.CA	G29.CA	8.3	8.6	8.9	0.02
Constraint G29.CA	G32.CA	8.3	8.6	8.9	0.02
Constraint G32.CA	G35.CA	8.3	8.6	8.9	0.02
Constraint G35.CA	G38.CA	8.3	8.6	8.9	0.02
Constraint G38.CA	G41.CA	8.3	8.6	8.9	0.02
Constraint G41.CA	G44.CA	8.3	8.6	8.9	0.02
Constraint G44.CA	G47.CA	8.3	8.6	8.9	0.02
Constraint G47.CA	G50.CA	8.3	8.6	8.9	0.02
Constraint G50.CA	G53.CA	8.3	8.6	8.9	0.02
Constraint G53.CA	G56.CA	8.3	8.6	8.9	0.02
Constraint G56.CA	G59.CA	8.3	8.6	8.9	0.02
Constraint G59.CA	G62.CA	8.3	8.6	8.9	0.02
Constraint G62.CA	G65.CA	8.3	8.6	8.9	0.02
Constraint G65.CA	G68.CA	8.3	8.6	8.9	0.02
Constraint G68.CA	G71.CA	8.3	8.6	8.9	0.02
Constraint G71.CA	G74.CA	8.3	8.6	8.9	0.02
Constraint G74.CA	G77.CA	8.3	8.6	8.9	0.02
Constraint G77.CA	G80.CA	8.3	8.6	8.9	0.02


Constraint G23.CA	G53.CA	83	86	89	1.0
Constraint G29.CA	G59.CA	83	86	89	1.0
Constraint G35.CA	G65.CA	83	86	89	1.0
Constraint G41.CA	G71.CA	83	86	89	1.0
Constraint G50.CA	G80.CA	83	86	89	1.0