# List of top-scoring protein chains for T0206.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c3hA 137 7.82e-09 1c28A 135 8.45e-09 1c28A b.22.1.1 23857 1gr3A 160 5.65e-08 b.22.1.1 65476 1o91A 178 1.39e-05 1pk6C 129 3.81e-03 1pk6A 133 2.89e-02 1pk6B 132 3.59e-01 1kyzA 365 5.03e+00 a.4.5.29 73312 c.66.1.12 73313 1fb7A 99 7.35e+00 1hvc b.50.1.1 26683 1bjnA 360 8.67e+00 1bjnA c.67.1.4 34469 1gy7A 125 9.35e+00 d.17.4.2 70738 1q33A 292 1.27e+01 1a9mA 99 1.35e+01 1hvc b.50.1.1 26642 1mhwA 175 1.52e+01 d.3.1.1 79132 1gzhB 249 1.59e+01 c.15.1.4 70808 c.15.1.4 70809 1kzyC 259 1.60e+01 c.15.1.4 73383 c.15.1.4 73384 1nxuA 333 1.62e+01 c.122.1.1 86389 1s20A 340 1.64e+01 1gisA 248 1.66e+01 d.165.1.1 83289 1giuA 247 1.74e+01 d.165.1.1 83290 1nliA 248 1.82e+01 d.165.1.1 80625 1j4gA 248 1.85e+01 d.165.1.1 66379 1mrj 247 1.91e+01 1mrj d.165.1.1 42177 1bdqA 99 1.94e+01 1fmb b.50.1.1 26686 1p4cA 380 1.96e+01 1dg6A 191 1.98e+01 1d4vB b.22.1.1 23883 1tcxA 99 1.99e+01 1hvc b.50.1.1 26748 1h54A 754 2.03e+01 a.102.1.4 60634 b.30.5.3 60635 1oahA 519 2.04e+01 a.138.1.3 86736 1fs0G 230 2.05e+01 1fs0G c.49.2.1 59999 1rj8A 164 2.07e+01 1jcmP 259 2.18e+01 c.1.2.4 71633 1jj2B 337 2.36e+01 1ffkB b.43.3.2 63086 1ffkB 337 2.56e+01 1ffkB b.43.3.2 25719 1odyA 99 2.58e+01 1hvc b.50.1.1 26581 1ml5e 338 2.86e+01 1bdlA 99 3.03e+01 1fmb b.50.1.1 26705 1bdrA 99 3.03e+01 1fmb b.50.1.1 26702 1r5aA 218 3.10e+01 1mu2B 426 3.12e+01 e.8.1.2 79471 1metA 99 3.29e+01 1fmb b.50.1.1 26593 1itpA 77 3.30e+01 d.58.3.2 66371 1hivA 99 3.35e+01 1fmb b.50.1.1 26555 1nh0A 99 3.39e+01 3tlhA 99 3.42e+01 1hvc b.50.1.1 26609 1odyB 99 3.45e+01 1fmb b.50.1.1 26582 1du3D 168 3.50e+01 1d4vB b.22.1.1 23888 1pii 452 3.50e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1rtyA 193 3.52e+01 1buuA 168 3.55e+01 1rtm1 d.169.1.1 42366 h.1.1.1 45388 1d4yA 99 3.59e+01 1hvc b.50.1.1 26549 1axaA 99 3.62e+01 1hvc b.50.1.1 26633 1eejA 216 3.68e+01 1eejA c.47.1.9 33057 d.17.3.1 38071 1aaqA 99 3.73e+01 1fmb b.50.1.1 26688 1d4vB 163 3.82e+01 1d4vB b.22.1.1 23884 1bwbA 99 3.86e+01 1fmb b.50.1.1 26517 1d4sA 99 3.91e+01 1hvc b.50.1.1 26692 1shsA 147 3.92e+01 1shsA b.15.1.1 23675 1fl2A 310 3.94e+01 1hyuA c.3.1.5 59869 c.3.1.5 59870 1merA 99 3.96e+01 1hvc b.50.1.1 26523