# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c28A 135 2.42e-08 1c28A b.22.1.1 23857 1c3hA 137 1.26e-07 b.22.1.1 -3255 1gr3A 160 1.51e-06 b.22.1.1 65476 1o91A 178 5.00e-05 b.22.1.1 -3282 1pk6C 129 2.18e-03 b.22.1.1 -3293 1pk6A 133 5.96e-03 b.22.1.1 -3287 1pk6B 132 3.12e-01 b.22.1.1 -3290 1s72B 338 3.41e-01 1jj2B 337 3.83e-01 1ffkB b.43.3.2 63086 1qovH 260 3.89e-01 6prcH b.41.1.1 25464 f.23.10.1 43457 1rzhH 260 5.02e-01 b.41.1.1 -3979 f.23.10.1 -12092 1w1kA 560 7.99e-01 1e8gA 560 8.11e-01 1qltA d.58.32.1 39455 d.145.1.1 41718 1dyoA 160 8.39e-01 1dyoA b.18.1.7 23771 1p42A 270 9.47e-01 d.14.1.7 87754 d.14.1.7 87755 2prd 174 1.25e+00 2prd b.40.5.1 25435 1ewkA 490 1.27e+00 1ewkA c.93.1.1 35712 1p2zA 968 1.70e+00 b.121.2.2 -3020 b.121.2.2 -3021 1jofA 365 2.30e+00 b.69.10.1 71775 1qexA 288 2.36e+00 1qexA b.32.1.1 24425 1vpsA 289 2.85e+00 1vpsA b.121.6.1 23336 1n08A 163 3.53e+00 b.43.5.1 79730 1qfhA 212 3.65e+00 1qfhA b.1.18.10 21893 b.1.18.10 21894 1ja1A 622 4.08e+00 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1jxpA 186 4.56e+00 1jxpA b.47.1.3 26402 1op4A 159 4.70e+00 b.1.6.1 -2794 1han 297 5.54e+00 1han d.32.1.3 38506 d.32.1.3 38507 1lkdA 297 5.90e+00 d.32.1.3 78059 d.32.1.3 78060 1aozA 552 6.99e+00 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1i50B 1224 7.49e+00 e.29.1.1 61755 1aly 146 7.50e+00 1aly b.22.1.1 23856 1l7lA 121 8.64e+00 b.18.1.16 77790 1g6gA 127 8.83e+00 1g6gA b.26.1.2 23916 1jvnA 555 9.38e+00 c.1.2.1 67355 c.23.16.1 67356 1fjrA 195 1.07e+01 1fjrA b.102.1.1 59855 1nciA 110 1.07e+01 1edhA b.1.6.1 22191 1alo 907 1.25e+01 1alo 1ki1B 352 1.28e+01 a.87.1.1 72497 b.55.1.1 72498 1rj8A 164 1.29e+01 b.22.1.1 -3263 1dxrH 258 1.32e+01 6prcH b.41.1.1 25456 f.23.10.1 43433 7ahlA 293 1.33e+01 7ahlA f.6.1.1 43812 1q7fA 286 1.38e+01 unknown_sccs -4599 1jj2X 240 1.40e+01 1ffkV c.9.2.1 63109 1hlrA 907 1.44e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1vlbA 907 1.44e+01 1s72Y 241 1.45e+01 1pot 325 1.48e+01 1pot c.94.1.1 35807 1gwmA 153 1.63e+01 b.18.1.19 83348 1osyA 115 1.74e+01 unknown_sccs -2857 1olzA 663 1.79e+01 b.1.1.4 -2678 unknown_sccs -4626 unknown_sccs -12590 1je5A 206 1.86e+01 1je5A b.40.4.7 62909 1sixA 174 1.88e+01 b.85.4.1 -5030 1qouA 181 1.89e+01 1qouA b.17.1.1 23707 1f8vA 355 1.90e+01 2bbvA b.121.4.4 23329 1pkoA 139 1.90e+01 b.1.1.1 88147 1jd0A 263 1.91e+01 2cba b.74.1.1 62888 1kxgA 152 1.93e+01 b.22.1.1 73145 1rwiA 270 2.00e+01 unknown_sccs -4603 1kw3B 292 2.05e+01 d.32.1.3 77549 d.32.1.3 77550 1p7gA 222 2.15e+01 a.2.11.1 -108 d.44.1.1 -9742 1opbA 135 2.18e+01 1hmt b.60.1.2 27216 1fvgA 199 2.19e+01 1fvaA d.58.28.1 39408 1mv3A 213 2.32e+01 b.34.2.1 -3555 1m6pA 152 2.40e+01 1m6pA b.64.1.1 27519 1ux6A 350 2.49e+01 unknown_sccs -3451 unknown_sccs -12886 1m7vA 363 2.51e+01 d.174.1.1 78748 1dg6A 191 2.58e+01 1d4vB b.22.1.1 23883 1gklA 297 2.67e+01 c.69.1.2 65250 1vybA 238 2.70e+01 1gxrA 337 2.75e+01 b.69.4.1 70722 1s7jA 262 2.85e+01 d.21.1.2 -9424 1a1x 108 2.85e+01 1a1x b.63.1.1 27514 1h30A 422 2.86e+01 b.29.1.4 76604 b.29.1.4 76605 1iu4A 331 2.98e+01 d.3.1.8 71430 1o6sB 105 3.02e+01 b.1.6.1 81096 1s3iA 310 3.04e+01 b.46.1.1 -4111 c.65.1.1 -8042 1kkhA 317 3.07e+01 d.14.1.5 72645 d.58.26.3 72646 1uisA 231 3.11e+01 d.22.1.1 -9450 1bj4A 470 3.27e+01 1bj4A c.67.1.4 34479 1dgfA 497 3.36e+01 1cf9A e.5.1.1 42782 1fi2A 201 3.37e+01 1fi2A b.82.1.2 59845 1bv1 159 3.39e+01 1bv1 d.129.3.1 41313 1gp0A 143 3.43e+01 b.64.1.1 70300 1lo7A 141 3.59e+01 d.38.1.1 74144 1ddmA 135 3.61e+01 2nmbA b.55.1.2 26993 1cwvA 492 3.62e+01 1cwvA b.1.14.1 22373 b.1.14.1 22374 b.1.14.1 22375 b.1.14.1 22376 d.169.1.3 42442 1l8fA 207 3.63e+01 b.52.1.1 84537 1ewfA 456 3.63e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1m2oA 768 3.68e+01 a.71.2.1 78480 b.2.8.1 78481 c.62.1.2 78482 d.109.2.1 78483 g.41.10.1 78484 1nkqA 259 3.82e+01 1be9A 119 3.87e+01 1pdr b.36.1.1 24774