# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c28A	135	9.07e-08	1c28A	b.22.1.1	23857
1c3hA	137	1.64e-07			
1gr3A	160	5.82e-07		b.22.1.1	65476
1o91A	178	3.80e-05			
1pk6A	133	5.12e-03			
1pk6C	129	7.78e-03			
1pk6B	132	1.44e-01			
1v61A	132	2.39e+00			
1p42A	270	3.44e+00		d.14.1.7	87754
				d.14.1.7	87755
1clc	639	3.55e+00	1clc	a.102.1.2	18835
				b.1.18.2	21872
1ja1A	622	4.78e+00	1amoA	b.43.4.1	62803
				c.23.5.2	62804
				c.25.1.4	62805
1dxrH	258	6.32e+00	6prcH	b.41.1.1	25456
				f.23.10.1	43433
1ut9A	609	7.22e+00			
1n08A	163	7.77e+00		b.43.5.1	79730
1qexA	288	9.90e+00	1qexA	b.32.1.1	24425
1riqA	465	1.48e+01			
1bteA	97	1.66e+01	1bteA	g.7.1.3	44463
2arcA	164	1.73e+01	2arcA	b.82.4.1	28148
1ujxA	119	1.97e+01			
1vpsA	289	2.02e+01	1vpsA	b.121.6.1	23336
1b6rA	355	2.05e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1dymA	402	2.08e+01	1celA	b.29.1.10	24304
1e79H	146	2.08e+01	1e79H	a.2.10.1	15721
				b.93.1.1	28438
1nciA	110	2.11e+01	1edhA	b.1.6.1	22191
1ojjA	402	2.17e+01			
1k8kB	394	2.37e+01		c.55.1.1	68307
1qe3A	489	2.43e+01	2bce	c.69.1.1	34630
1pl3A	186	2.51e+01		b.1.9.1	88158
1rl4A	188	2.51e+01			
1h2kA	349	2.56e+01		b.82.2.6	76572
1d7cA	190	2.57e+01	1d7bA	b.1.9.1	22309
1przA	252	2.67e+01			
1qfhA	212	2.83e+01	1qfhA	b.1.18.10	21893
				b.1.18.10	21894
1gp0A	143	2.88e+01		b.64.1.1	70300
1g0hA	252	2.96e+01	1dk4A	e.7.1.1	60171
1kwgA	645	3.20e+01		b.71.1.1	77561
				c.1.8.1	77562
				c.23.16.5	77563
1h8eH	146	3.28e+01	1e79H	b.93.1.1	60757
1fjrA	195	3.58e+01	1fjrA	b.102.1.1	59855
2bc2A	227	3.69e+01	1a7tA	d.157.1.1	42031
1aly	146	3.73e+01	1aly	b.22.1.1	23856
1rypE	242	3.85e+01	1rypE	d.153.1.4	41936
1uisA	231	3.85e+01