# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c28A 135 6.01e-10 1c28A b.22.1.1 23857 1c3hA 137 9.78e-10 1gr3A 160 6.13e-09 b.22.1.1 65476 1o91A 178 5.11e-07 1pk6C 129 1.73e-04 1pk6A 133 3.09e-04 1pk6B 132 1.51e-02 1dyoA 160 5.99e-01 1dyoA b.18.1.7 23771 1p42A 270 7.29e-01 d.14.1.7 87754 d.14.1.7 87755 1qfhA 212 9.78e-01 1qfhA b.1.18.10 21893 b.1.18.10 21894 1pl3A 186 1.25e+00 b.1.9.1 88158 1jj2B 337 1.94e+00 1ffkB b.43.3.2 63086 1nciA 110 2.33e+00 1edhA b.1.6.1 22191 1n08A 163 2.65e+00 b.43.5.1 79730 1uisA 231 3.47e+00 1ja1A 622 3.69e+00 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1ki1B 352 5.42e+00 a.87.1.1 72497 b.55.1.1 72498 1aly 146 5.82e+00 1aly b.22.1.1 23856 2prd 174 6.58e+00 2prd b.40.5.1 25435 1rj8A 164 7.19e+00 1osyA 115 7.71e+00 1p2zA 968 8.26e+00 1d7cA 190 8.48e+00 1d7bA b.1.9.1 22309 1lw3A 657 8.82e+00 1sg1X 161 9.18e+00 1ewkA 490 9.40e+00 1ewkA c.93.1.1 35712 1dxrH 258 9.64e+00 6prcH b.41.1.1 25456 f.23.10.1 43433 1lwdA 413 9.81e+00 c.77.1.1 78265 1h30A 422 1.02e+01 b.29.1.4 76604 b.29.1.4 76605 1przA 252 1.03e+01 1dg6A 191 1.11e+01 1d4vB b.22.1.1 23883 1opbA 135 1.16e+01 1hmt b.60.1.2 27216 1rzhH 260 1.18e+01 1riqA 465 1.20e+01 1mv3A 213 1.35e+01 1jofA 365 1.38e+01 b.69.10.1 71775 1han 297 1.47e+01 1han d.32.1.3 38506 d.32.1.3 38507 1extA 162 1.48e+01 1extA g.24.1.1 44900 g.24.1.1 44901 g.24.1.1 44902 1qexA 288 1.51e+01 1qexA b.32.1.1 24425 1o6sB 105 1.58e+01 b.1.6.1 81096 1ng0A 253 1.65e+01 b.121.4.7 80475 1gwmA 153 1.70e+01 b.18.1.19 83348 1led 243 1.70e+01 1led b.29.1.1 24039 1ewfA 456 1.86e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1g1cA 99 1.87e+01 b.1.1.4 65078 1j1bA 420 1.88e+01 1i8kA 107 1.90e+01 b.1.1.1 71130 1lkdA 297 1.96e+01 d.32.1.3 78059 d.32.1.3 78060 1b35C 282 1.99e+01 1b35C 1mrzA 293 2.00e+01 1tvxA 75 2.08e+01 1tvxA d.9.1.1 37441 1fuxA 166 2.13e+01 1fjjA b.17.1.2 60034 1qouA 181 2.20e+01 1qouA b.17.1.1 23707 1c8zA 265 2.20e+01 1c8zA d.23.1.1 38375 1q33A 292 2.22e+01 1mqoA 227 2.30e+01 1qovH 260 2.31e+01 6prcH b.41.1.1 25464 f.23.10.1 43457 1v61A 132 2.37e+01 1a1x 108 2.38e+01 1a1x b.63.1.1 27514 1kxgA 152 2.38e+01 b.22.1.1 73145 1qlaB 239 2.53e+01 1qlaB a.1.2.1 15679 d.15.4.2 37707 1gklA 297 2.60e+01 c.69.1.2 65250 1rwiA 270 2.64e+01 1vybA 238 2.64e+01 1kshB 152 2.76e+01 b.1.18.8 72915 1g6gA 127 2.78e+01 1g6gA b.26.1.2 23916 1ujxA 119 2.95e+01 1lo7A 141 2.99e+01 d.38.1.1 74144 1h8eH 146 3.01e+01 1e79H b.93.1.1 60757 1rfs 139 3.02e+01 1rfs b.33.1.1 24434 1i50B 1224 3.10e+01 e.29.1.2 61755 1wba 175 3.13e+01 1wba b.42.4.1 25591 1ckmA 330 3.19e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1xgsA 295 3.30e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1e8gA 560 3.32e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 2mev1 277 3.36e+01 2mev1 1bbpA 173 3.41e+01 1bbpA b.60.1.1 27147 1sfp 114 3.43e+01 1sfp b.23.1.1 23895 1klo 162 3.47e+01 1klo g.3.11.2 44326 g.3.11.2 44327 g.3.11.2 44328 1ojjA 402 3.49e+01 1uz5A 402 3.49e+01 1e79H 146 3.52e+01 1e79H a.2.10.1 15721 b.93.1.1 28438 1p7gA 222 3.67e+01 1l1oC 181 3.74e+01 b.40.4.3 73480 1r9gA 216 3.82e+01 1hn2A 159 3.96e+01 b.60.1.1 65890