# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c3hA	137	9.10e-10		b.22.1.1	-3255
1c28A	135	1.16e-09	1c28A	b.22.1.1	23857
1gr3A	160	2.01e-09		b.22.1.1	65476
1o91A	178	3.80e-06		b.22.1.1	-3282
1pk6C	129	3.22e-04		b.22.1.1	-3293
1pk6A	133	9.83e-03		b.22.1.1	-3287
1pk6B	132	8.26e-02		b.22.1.1	-3290
1pii	452	7.69e+00	1pii	c.1.2.4	28559
				c.1.2.4	28563
1nh0A	99	8.67e+00		b.50.1.1	-4299
1ox0A	430	9.74e+00		c.95.1.1	87495
				c.95.1.1	87496
1difA	99	1.08e+01	1fmb	b.50.1.1	26503
1ri5A	298	1.15e+01		unknown_sccs	-8063
1mrj	247	1.35e+01	1mrj	d.165.1.1	42177
1b79A	119	1.42e+01	1b79A	a.81.1.1	18451
1dazC	99	1.74e+01	1hvc	b.50.1.1	26501
1s72B	338	1.75e+01			
1pysA	350	1.89e+01	1pysA	d.104.1.1	40775
1dfuP	94	1.92e+01	1dfuP	b.53.1.1	26936
1dyoA	160	2.04e+01	1dyoA	b.18.1.7	23771
1aly	146	2.19e+01	1aly	b.22.1.1	23856
1jj2B	337	2.24e+01	1ffkB	b.43.3.2	63086
1gyhA	318	2.50e+01		b.67.2.1	70757
1b5qA	472	2.53e+01	1b37B	c.3.1.2	30404
				d.16.1.5	37968
3nul	130	2.76e+01	3nul	d.110.1.1	40891
1a6bB	40	3.03e+01	1a6bB	g.40.1.1	45172
1kapP	479	3.18e+01	1sat	unknown_sccs	28012
				d.92.1.6	40298
1v9fA	325	3.26e+01			
1pl3A	186	3.26e+01		b.1.9.1	88158
1fs0G	230	3.38e+01	1fs0G	c.49.2.1	59999
1it2A	146	3.40e+01		a.1.1.2	66365
1b7yA	350	3.50e+01	1pysA	d.104.1.1	40776
1kzkA	99	3.52e+01		b.50.1.1	73371
1p99A	295	3.76e+01		c.94.1.1	-8697
1d7cA	190	3.94e+01	1d7bA	b.1.9.1	22309