# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c3hA	137	7.73e-09			
1c28A	135	1.90e-08	1c28A	b.22.1.1	23857
1gr3A	160	5.08e-08		b.22.1.1	65476
1o91A	178	5.24e-06			
1pk6C	129	1.56e-03			
1pk6A	133	1.84e-03			
1pk6B	132	3.50e-02			
1opbA	135	2.21e+00	1hmt	b.60.1.2	27216
1jj2B	337	2.27e+00	1ffkB	b.43.3.2	63086
1aly	146	2.54e+00	1aly	b.22.1.1	23856
1dyoA	160	3.95e+00	1dyoA	b.18.1.7	23771
1dg6A	191	5.65e+00	1d4vB	b.22.1.1	23883
1bteA	97	6.15e+00	1bteA	g.7.1.3	44463
1pl3A	186	7.41e+00		b.1.9.1	88158
1uisA	231	8.02e+00			
1n08A	163	8.19e+00		b.43.5.1	79730
1qexA	288	8.73e+00	1qexA	b.32.1.1	24425
1b7gO	340	9.56e+00	1b7gO	c.2.1.3	29992
				d.81.1.1	39907
1lci	550	9.60e+00	1lci	e.23.1.1	43349
1d7cA	190	1.04e+01	1d7bA	b.1.9.1	22309
1hn2A	159	1.11e+01		b.60.1.1	65890
1gt1A	159	1.11e+01			
1v61A	132	1.14e+01			
1faoA	126	1.25e+01	1faoA	b.55.1.1	26974
1j1bA	420	1.26e+01			
1eerB	227	1.38e+01	1eerB	b.1.2.1	22011
				b.1.2.1	22012
2rhe	114	1.68e+01	8fabA	b.1.1.1	20523
1b6rA	355	1.68e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1qe3A	489	1.74e+01	2bce	c.69.1.1	34630
1obpA	159	1.79e+01	1obpA	b.60.1.1	27092
3erk	364	1.84e+01	1hcl	d.144.1.7	41654
2mprA	421	1.85e+01	2mprA	f.4.3.2	43788
1cf2O	337	2.11e+01	1b7gO	c.2.1.3	29994
				d.81.1.1	39909
1p42A	270	2.16e+01		d.14.1.7	87754
				d.14.1.7	87755
1mv3A	213	2.18e+01			
1gp0A	143	2.24e+01		b.64.1.1	70300
1ujxA	119	2.50e+01			
1yge	839	2.64e+01	1yge	a.119.1.1	19234
				b.12.1.1	23634
1ggxA	223	2.79e+01	1ggxA	d.22.1.1	38367
1wba	175	2.79e+01	1wba	b.42.4.1	25591
1sg1X	161	2.89e+01			
1ng0A	253	2.90e+01		b.121.4.7	80475
1nciA	110	2.98e+01	1edhA	b.1.6.1	22191
1rovA	857	3.09e+01			
1c8zA	265	3.20e+01	1c8zA	d.23.1.1	38375
1xypA	190	3.24e+01	1axkA	b.29.1.11	24327
1avgI	142	3.54e+01	1avgI	b.60.1.3	27229
1a02N	301	3.61e+01	1a02N	b.1.18.1	21923
				b.2.5.3	22440
1iqaA	160	3.82e+01		b.22.1.1	71274
1dxrH	258	3.82e+01	6prcH	b.41.1.1	25456
				f.23.10.1	43433
1gu3A	149	3.98e+01		b.18.1.14	76350