# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c3hA	137	3.56e-07			
1c28A	135	4.01e-07	1c28A	b.22.1.1	23857
1gr3A	160	5.59e-07		b.22.1.1	65476
1o91A	178	6.24e-05			
1pk6C	129	7.23e-04			
1pk6A	133	5.88e-03			
1pk6B	132	4.26e-02			
1pl3A	186	2.34e+00		b.1.9.1	88158
1n08A	163	2.76e+00		b.43.5.1	79730
1hn2A	159	3.52e+00		b.60.1.1	65890
1gt1A	159	3.56e+00			
1v61A	132	3.66e+00			
1aly	146	4.44e+00	1aly	b.22.1.1	23856
1ewfA	456	5.18e+00	1bp1	d.83.1.1	40024
				d.83.1.1	40025
1obpA	159	5.24e+00	1obpA	b.60.1.1	27092
1opbA	135	5.34e+00	1hmt	b.60.1.2	27216
1qexA	288	5.74e+00	1qexA	b.32.1.1	24425
1nciA	110	8.79e+00	1edhA	b.1.6.1	22191
1p42A	270	9.29e+00		d.14.1.7	87754
				d.14.1.7	87755
1d7cA	190	9.98e+00	1d7bA	b.1.9.1	22309
1ojjA	402	1.05e+01			
2rhe	114	1.08e+01	8fabA	b.1.1.1	20523
1dymA	402	1.31e+01	1celA	b.29.1.10	24304
1ki1B	352	1.47e+01		a.87.1.1	72497
				b.55.1.1	72498
1uz5A	402	1.52e+01			
1q7fA	286	1.69e+01			
1dyoA	160	1.70e+01	1dyoA	b.18.1.7	23771
1a02N	301	1.70e+01	1a02N	b.1.18.1	21923
				b.2.5.3	22440
1wba	175	1.73e+01	1wba	b.42.4.1	25591
1eerB	227	1.81e+01	1eerB	b.1.2.1	22011
				b.1.2.1	22012
1uisA	231	1.82e+01			
1c8zA	265	1.90e+01	1c8zA	d.23.1.1	38375
1qfhA	212	1.91e+01	1qfhA	b.1.18.10	21893
				b.1.18.10	21894
1r9gA	216	2.00e+01			
1bteA	97	2.06e+01	1bteA	g.7.1.3	44463
1dg6A	191	2.07e+01	1d4vB	b.22.1.1	23883
1o6vA	466	2.12e+01		b.1.18.15	81099
				c.10.2.1	81100
1vjnA	220	2.18e+01			
1faoA	126	2.58e+01	1faoA	b.55.1.1	26974
1i50B	1224	2.68e+01		e.29.1.2	61755
1sczA	233	2.71e+01			
1gp0A	143	2.87e+01		b.64.1.1	70300
1xyn	178	2.93e+01	1axkA	b.29.1.11	24322
1lw3A	657	2.97e+01			
1fm2B	520	3.13e+01	1fm2B		
1jhfA	202	3.15e+01		a.4.5.2	63057
				b.87.1.1	63058
1mrzA	293	3.24e+01			
2por	301	3.39e+01	2por	f.4.3.1	43759
1giqA	413	3.41e+01		d.166.1.1	76224
				d.166.1.1	76225
1shsA	147	3.43e+01	1shsA	b.15.1.1	23675
1q33A	292	3.45e+01			
1xgsA	295	3.61e+01	1bn5	a.4.5.25	16216
				d.127.1.1	41153
2nlrA	234	3.79e+01	2nlrA	b.29.1.11	24344
1sg1X	161	3.79e+01			
2prd	174	3.97e+01	2prd	b.40.5.1	25435
1h2kA	349	3.98e+01		b.82.2.6	76572