# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gr3A 160 1.05e-07 b.22.1.1 65476 1c28A 135 2.55e-07 1c28A b.22.1.1 23857 1c3hA 137 3.67e-07 b.22.1.1 -3255 1o91A 178 4.70e-05 b.22.1.1 -3282 1pk6A 133 1.51e-03 b.22.1.1 -3287 1pk6C 129 3.62e-03 b.22.1.1 -3293 1fzoB 99 1.63e-01 1agdB b.1.1.2 60157 1fzkB 99 1.66e-01 1agdB b.1.1.2 60151 1lk2B 99 1.87e-01 b.1.1.2 -2576 1pk6B 132 3.15e-01 b.22.1.1 -3290 1kjvB 100 4.37e-01 b.1.1.2 77423 1fuxA 166 6.22e-01 1fjjA b.17.1.2 60034 1cd8 114 1.56e+00 1cd8 b.1.1.1 19714 1oaqL 120 1.70e+00 b.1.1.1 -2163 1mfa 247 2.12e+00 1mfa b.1.1.1 19888 b.1.1.1 19889 1dtoA 221 2.68e+00 1dtoA b.91.1.1 28405 1jofA 365 3.30e+00 b.69.10.1 71775 1jmxA 494 3.86e+00 a.3.1.7 66901 a.3.1.7 66902 b.1.18.14 66903 b.1.18.14 66904 b.61.4.1 66905 1p42A 270 4.00e+00 d.14.1.7 87754 d.14.1.7 87755 1d7cA 190 4.34e+00 1d7bA b.1.9.1 22309 1lmiA 131 5.07e+00 b.1.19.1 78098 1mqoA 227 5.54e+00 1dg6A 191 5.57e+00 1d4vB b.22.1.1 23883 1pl3A 186 6.20e+00 b.1.9.1 88158 1opbA 135 6.87e+00 1hmt b.60.1.2 27216 1k5nB 100 7.12e+00 b.1.1.2 77268 1cs6A 382 7.57e+00 1cs6A b.1.1.4 21760 b.1.1.4 21761 b.1.1.4 21762 b.1.1.4 21763 1klo 162 8.42e+00 1klo g.3.11.2 44326 g.3.11.2 44327 g.3.11.2 44328 1hdmB 193 8.71e+00 1hdmB b.1.1.2 21584 d.19.1.1 38158 1g0hA 252 8.97e+00 1dk4A e.7.1.1 60171 1ugxA 133 9.57e+00 1sdwA 314 9.68e+00 b.121.1.2 -3024 b.121.1.2 -3025 1fjrA 195 9.79e+00 1fjrA b.102.1.1 59855 1jj2B 337 9.80e+00 1ffkB b.43.3.2 63086 1vjpA 394 1.01e+01 c.2.1.3 -5897 d.81.1.3 -10480 1nciA 110 1.02e+01 1edhA b.1.6.1 22191 1dyoA 160 1.03e+01 1dyoA b.18.1.7 23771 1wwcA 118 1.05e+01 1wwcA b.1.1.4 21778 1bqk 124 1.06e+01 1bqk b.6.1.1 22889 1gppA 237 1.10e+01 b.86.1.2 76262 1aly 146 1.18e+01 1aly b.22.1.1 23856 1cb8A 678 1.24e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1jz8A 1023 1.26e+01 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.5.1 67833 c.1.8.3 67834 1s72B 338 1.37e+01 1fvrA 327 1.38e+01 d.144.1.7 60047 1opy 131 1.40e+01 1opy d.17.4.3 38113 1dp0A 1023 1.52e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1qfhA 212 1.54e+01 1qfhA b.1.18.10 21893 b.1.18.10 21894 1bteA 97 1.58e+01 1bteA g.7.1.3 44463 1gydB 315 1.59e+01 b.67.2.1 70751 1mkaA 171 1.59e+01 1mkaA d.38.1.2 38543 1gp0A 143 1.62e+01 b.64.1.1 70300 1b6rA 355 1.64e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1oh0A 131 1.68e+01 d.17.4.3 87004 1dmmA 131 1.68e+01 1opy d.17.4.3 38114 1nkgA 508 1.78e+01 1rwiA 270 1.89e+01 unknown_sccs -4603 1k3bA 119 1.90e+01 b.61.5.1 72016 1g6hA 257 1.91e+01 1gajA c.37.1.12 60318 1phm 310 2.06e+01 1phm b.121.1.2 59015 b.121.1.2 59016 1kbvA 327 2.08e+01 b.6.1.3 68395 b.6.1.3 68396 1v7wA 807 2.09e+01 1b7gO 340 2.11e+01 1b7gO c.2.1.3 29992 d.81.1.1 39907 1lw3A 657 2.11e+01 unknown_sccs -4378 unknown_sccs -7358 1kqwA 134 2.22e+01 b.60.1.2 72887 1cqkA 101 2.27e+01 1cqkA b.1.1.2 21547 1g6gA 127 2.28e+01 1g6gA b.26.1.2 23916 1gxmA 332 2.35e+01 a.102.5.1 76371 1apyB 141 2.39e+01 1apyB 1n6aA 259 2.41e+01 b.76.2.1 80121 b.85.7.1 80122 1i50B 1224 2.43e+01 e.29.1.1 61755 1kgcE 242 2.45e+01 b.1.1.1 77386 b.1.1.2 77387 1bkvA 30 2.53e+01 k.3.1.1 46402 1g1cA 99 2.65e+01 b.1.1.4 65078 1giqA 413 2.69e+01 d.166.1.1 76224 d.166.1.1 76225 1rj8A 164 2.71e+01 b.22.1.1 -3263 1ut9A 609 2.79e+01 a.102.1.2 -1326 b.1.18.2 -2710 1pmy 123 2.81e+01 1bqk b.6.1.1 22888 1i4fB 100 2.83e+01 1agdB b.1.1.2 61689 2i1b 153 3.21e+01 2i1b b.42.1.2 25538 1l7lA 121 3.30e+01 b.18.1.16 77790 1kskA 234 3.34e+01 unknown_sccs -10150 d.66.1.5 72920 1gyhA 318 3.42e+01 b.67.2.1 70757 1ogoX 574 3.44e+01 unknown_sccs -3237 unknown_sccs -4783 1n1tA 641 3.45e+01 b.29.1.15 79821 b.68.1.1 79822 1k12A 158 3.53e+01 b.18.1.15 71978 1dlfH 124 3.59e+01 1igtB b.1.1.1 20383 1enfA 212 3.71e+01 3seb b.40.2.2 25198 d.15.6.1 37787 1f7dA 136 3.75e+01 1dun b.85.4.1 28353 1vdwA 254 3.80e+01 e.7.1.1 -11868 1cwvA 492 3.83e+01 1cwvA b.1.14.1 22373 b.1.14.1 22374 b.1.14.1 22375 b.1.14.1 22376 d.169.1.3 42442