# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c28A	135	7.03e-08	1c28A	b.22.1.1	23857
1c3hA	137	8.20e-08			
1gr3A	160	3.66e-07		b.22.1.1	65476
1o91A	178	3.69e-04			
1pk6C	129	1.39e-02			
1pk6A	133	1.54e-01			
1pk6B	132	1.47e+00			
1om1A	332	4.94e+00			
1m2rA	327	5.02e+00		d.144.1.7	84760
1b5qA	472	5.12e+00	1b37B	c.3.1.2	30404
				d.16.1.5	37968
1a6o	332	5.30e+00	1a6o		
1ea5A	537	5.40e+00	2bce	c.69.1.1	34592
1ixh	321	5.89e+00	1ixh	c.94.1.1	35761
1pii	452	7.62e+00	1pii	c.1.2.4	28559
				c.1.2.4	28563
1b6rA	355	1.30e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1v33A	366	1.55e+01			
1eejA	216	1.55e+01	1eejA	c.47.1.9	33057
				d.17.3.1	38071
3daaA	277	1.81e+01	1daaA	e.17.1.1	43272
1lkdA	297	1.84e+01		d.32.1.3	78059
				d.32.1.3	78060
1han	297	2.00e+01	1han	d.32.1.3	38506
				d.32.1.3	38507
1epxA	370	2.16e+01	1fbaA	c.1.10.1	29150
1nh0A	99	2.45e+01			
1dp0A	1023	2.46e+01		b.1.4.1	22073
				b.1.4.1	22074
				b.18.1.5	23722
				b.30.5.1	24346
				c.1.8.3	28845
1difA	99	2.56e+01	1fmb	b.50.1.1	26503
1jj2B	337	2.67e+01	1ffkB	b.43.3.2	63086
1igrA	478	2.78e+01	1igrA	c.10.2.5	30877
				c.10.2.5	30878
				g.3.9.1	44188
1i60A	278	2.94e+01		c.1.15.4	71118
1kzyC	259	3.09e+01		c.15.1.4	73383
				c.15.1.4	73384
1aly	146	3.23e+01	1aly	b.22.1.1	23856
3nul	130	3.32e+01	3nul	d.110.1.1	40891
1p99A	295	3.36e+01			
1jz8A	1023	3.42e+01		b.1.4.1	67830
				b.1.4.1	67831
				b.18.1.5	67832
				b.30.5.1	67833
				c.1.8.3	67834
1cs8A	316	3.50e+01	1cs8A	d.3.1.1	37065
1ga8A	311	3.91e+01	1ga8A	c.68.1.4	34516