# List of top-scoring protein chains for t2k-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lslA 113 4.34e-01 g.60.1.1 78178 g.60.1.1 78179 1h7dA 49 5.71e-01 j.88.1.1 65701 1mv3A 213 6.10e-01 b.34.2.1 -3555 1a6bB 40 3.59e+00 1a6bB g.40.1.1 45172 1lv3A 68 4.40e+00 g.39.1.9 78231 1kozA 36 5.86e+00 g.3.6.2 72833 1qk9A 92 9.42e+00 1qk9A d.10.1.3 37485 3lriA 83 9.48e+00 1zeiA g.1.1.1 43995 2fdn 55 1.16e+01 2fdn d.58.1.1 38944 1fca 55 1.21e+01 2fdn d.58.1.1 38945 1bza 262 1.27e+01 1btl e.3.1.1 42701 1ncg 110 1.30e+01 1edhA b.1.6.1 22193 1lrv 244 1.38e+01 1lrv a.118.1.5 19146 1ccvA 56 1.46e+01 1eaiC g.22.1.1 44897 1icfI 65 1.63e+01 1icfI g.28.1.1 44958 1lwbA 122 1.91e+01 a.133.1.3 84728 1nciA 110 1.98e+01 1edhA b.1.6.1 22191 1fazA 122 2.00e+01 1fazA a.133.1.3 59757 1s5lB 510 2.01e+01 1vgh 55 2.02e+01 2vgh g.25.1.1 44945 1jjyA 636 2.09e+01 1jjyA 1ub1A 133 2.09e+01 d.10.1.3 -8969 1kmxA 55 2.17e+01 g.25.1.1 72758 4tsvA 150 2.19e+01 2tnfA b.22.1.1 23860 1a0hA 159 2.20e+01 1a0hA b.47.1.2 26229 g.14.1.1 44655 1awj 77 2.21e+01 1awj b.34.2.1 24497 2vgh 55 2.24e+01 2vgh g.25.1.1 44946 1k3rA 268 2.33e+01 b.40.4.10 72018 c.116.1.2 72019 1su8A 636 2.50e+01 e.26.1.2 -12015 1lmiA 131 2.50e+01 b.1.19.1 78098 1gkkA 297 2.51e+01 c.69.1.2 65248 1akp 114 2.53e+01 2mcm b.1.7.1 22212 1qm9A 198 2.55e+01 1qm9A d.58.7.1 39207 d.58.7.1 39208 1gklA 297 2.59e+01 c.69.1.2 65250 1n4oA 276 2.63e+01 e.3.1.1 -11764 1klo 162 2.66e+01 1klo g.3.11.2 44326 g.3.11.2 44327 g.3.11.2 44328 1tnfA 158 2.67e+01 2tnfA b.22.1.1 23871 1ffkZ 92 2.84e+01 1ffkZ g.41.8.3 45317 1odmA 331 2.88e+01 b.82.2.1 86875 1bk0 331 2.88e+01 1bk0 b.82.2.1 28118 4rhv4 68 2.89e+01 4rhv4 1qazA 351 2.99e+01 1qazA a.102.3.1 18848 1hrkA 359 3.30e+01 1hrkA c.92.1.1 61228 1npoA 95 3.37e+01 1npoA b.9.1.1 23270 1iysA 262 3.45e+01 e.3.1.1 -11760 1hmpA 217 3.46e+01 1qk3A c.61.1.1 34075 1ffkW 73 3.46e+01 1ffkW g.41.8.1 45315 2if1 126 3.70e+01 2if1 d.64.1.1 39547 1pyiA 96 3.77e+01 1pyiA g.38.1.1 45079 h.1.3.1 45512