# List of top-scoring protein chains for t2k-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mxb 383 8.28e-01 1mxb d.130.1.1 41329 d.130.1.1 41330 d.130.1.1 41331 1mxa 383 9.17e-01 1mxb d.130.1.1 41326 d.130.1.1 41327 d.130.1.1 41328 1h7dA 49 1.63e+00 j.88.1.1 65701 1fuxA 166 1.84e+00 1fjjA b.17.1.2 60034 1a6bB 40 2.06e+00 1a6bB g.40.1.1 45172 1rg9A 383 3.93e+00 1c8gA 548 5.04e+00 2cas b.121.5.2 23380 1bf2 750 5.80e+00 1bf2 b.1.18.2 21860 b.71.1.1 27787 c.1.8.1 28774 1l7lA 121 8.46e+00 b.18.1.16 77790 1jjyA 636 9.05e+00 1jjyA e.26.1.2 63141 1su8A 636 9.13e+00 1m6eX 359 1.07e+01 1kozA 36 1.13e+01 g.3.6.2 72833 1klo 162 1.14e+01 1klo g.3.11.2 44326 g.3.11.2 44327 g.3.11.2 44328 1icfI 65 1.15e+01 1icfI g.28.1.1 44958 2cas 548 1.15e+01 2cas b.121.5.2 23376 1hrkA 359 1.19e+01 1hrkA c.92.1.1 61228 1lslA 113 1.20e+01 g.60.1.1 78178 g.60.1.1 78179 4dpvZ 584 1.21e+01 2cas b.121.5.2 23377 1nscA 390 1.26e+01 2qwc b.68.1.1 27591 1s5lB 510 1.44e+01 1qm9A 198 1.45e+01 1qm9A d.58.7.1 39207 d.58.7.1 39208 1gu7A 364 1.51e+01 b.35.1.2 83321 c.2.1.1 83322 1q16B 512 1.56e+01 1vgh 55 1.64e+01 2vgh g.25.1.1 44945 1fd9A 213 1.86e+01 1fd9A d.26.1.1 59771 1bw3 125 1.91e+01 1bw4 b.52.1.2 26899 1vddA 228 1.96e+01 1tme1 274 1.97e+01 2mev1 2vgh 55 2.08e+01 2vgh g.25.1.1 44946 1bw4 125 2.10e+01 1bw4 b.52.1.2 26900 1kmxA 55 2.17e+01 g.25.1.1 72758 1ueoA 63 2.38e+01 1fca 55 2.42e+01 2fdn d.58.1.1 38945 1o04A 500 2.54e+01 c.82.1.1 86508 1mcvI 28 2.56e+01 g.3.2.1 78951 1odmA 331 2.56e+01 b.82.2.1 86875 1n0zA 45 2.58e+01 g.41.11.1 85247 1bk0 331 2.63e+01 1bk0 b.82.2.1 28118 1qm4A 396 2.75e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1j7rA 86 2.89e+01 1j7rA a.39.1.5 62701 1npoA 95 2.89e+01 1npoA b.9.1.1 23270 1fukA 165 3.00e+01 1fukA c.37.1.19 32409 1jcv 153 3.09e+01 1mfmA b.1.8.1 22279 1f1gA 154 3.12e+01 b.1.8.1 76153 1ig3A 263 3.34e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1bbi 71 3.36e+01 1pi2 g.3.13.1 44345 1lmiA 131 3.65e+01 b.1.19.1 78098 1cjaA 342 3.68e+01 1cjaA d.144.1.3 41708 1dymA 402 3.92e+01 1celA b.29.1.10 24304 2fdn 55 3.95e+01 2fdn d.58.1.1 38944